Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 1.9e-127 460.7 655 100.0
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 2.0e-100 370.9 232 85.3
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 7.5e-100 369.0 235 83.8
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 8.0e-94 349.0 233 80.3
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 2.7e-89 334.0 232 75.9
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 7.8e-73 279.3 224 69.2
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 7.3e-71 272.7 229 67.7
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 2.1e-70 271.2 227 68.7
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 2.8e-70 270.8 227 68.3
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 2.8e-70 270.8 227 68.3
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 1.2e-65 255.4 229 61.1
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 6.0e-65 253.1 228 60.5
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 5.8e-44 183.3 125 73.6
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 4.6e-33 147.1 195 44.6
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 1.3e-32 145.6 217 42.4
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 1.1e-31 142.5 196 42.3
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 1.1e-31 142.5 196 42.3
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 4.3e-31 140.6 202 41.1
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 1.3e-30 139.0 184 44.0
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 1.6e-30 138.7 226 37.6
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 6.3e-30 136.7 200 43.0
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 8.2e-30 136.3 186 43.0
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 1.2e-28 132.5 190 39.5
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 1.5e-28 132.1 205 41.5
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 3.4e-28 131.0 194 39.2
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 1.0e-27 129.4 165 41.8
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 1.3e-27 129.0 173 42.2
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 1.1e-26 125.9 182 40.1
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 1.1e-26 125.9 205 42.4
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 1.9e-26 125.2 212 35.4
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 9.4e-26 122.9 179 39.7
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 1.6e-25 122.1 221 35.7
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 1.6e-25 122.1 204 40.2
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 4.6e-25 120.6 205 38.5
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 7.9e-25 119.8 181 39.8
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 1.0e-24 119.4 195 40.5
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 2.3e-24 118.2 182 35.7
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 1.5e-23 115.5 190 38.4
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 1.5e-23 115.5 204 37.7
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 2.6e-23 114.8 189 36.5
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 4.8e-22 110.5 201 37.8
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 1.4e-21 109.0 192 34.9
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 1.4e-21 109.0 153 38.6
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 1.4e-21 109.0 183 34.4
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 3.1e-21 107.8 158 41.1
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 3.1e-21 107.8 158 41.1
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 4.1e-21 107.5 174 37.4
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 5.3e-21 107.1 158 40.5
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 6.9e-21 106.7 187 35.8
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 1.5e-20 105.5 214 33.2
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 2.6e-20 104.8 161 41.6
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 4.5e-20 104.0 192 34.4
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 2.9e-19 101.3 204 33.8
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 2.9e-19 101.3 179 35.2
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 2.9e-19 101.3 167 35.9
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 3.0e-16 91.3 179 33.0
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 5.7e-15 87.0 118 37.3
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 3.7e-14 84.3 112 39.3
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 6.3e-14 83.6 222 28.8
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 1.1e-13 82.8 194 30.4
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 1.1e-13 82.8 118 35.6
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 1.1e-13 82.8 138 33.3
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 5.3e-13 80.5 158 32.9
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 7.0e-13 80.1 103 39.8
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 9.1e-13 79.7 190 29.5
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 2.0e-12 78.6 104 38.5
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 2.6e-12 78.2 106 43.4
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 5.9e-12 77.0 190 32.1
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 1.3e-11 75.9 151 38.4
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 2.9e-11 74.7 133 39.1
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 2.5e-10 71.6 60 53.3
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 2.5e-10 71.6 172 34.3
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 7.2e-10 70.1 177 29.4
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 2.1e-09 68.6 77 44.2
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.0e-08 66.2 203 25.1
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 1.0e-08 66.2 80 41.2
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 1.4e-08 65.9 153 28.1
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 6.7e-08 63.5 62 50.0
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 6.7e-08 63.5 144 31.9
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 7.5e-07 60.1 153 30.7
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 9.7e-07 59.7 133 36.8
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 2.8e-06 58.2 69 39.1


User provided reference genes

Program Settings