Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.1e-71 273.5 327 100.0
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.4e-70 270.8 327 99.1
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.0e-69 266.9 327 98.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.6e-69 266.5 327 98.8
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.0e-68 264.6 327 98.8
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.5e-67 260.0 327 98.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-66 257.3 327 96.9
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.5e-66 256.1 327 96.3
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.5e-66 256.1 327 96.3
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 6.0e-66 255.4 327 96.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.3e-63 247.7 331 95.5
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.6e-63 247.3 336 82.7
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 4.8e-63 245.7 343 79.6
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.8e-62 243.8 326 94.8
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 6.9e-62 241.9 327 94.2
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.5e-61 240.7 326 94.5
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.8e-61 238.8 327 94.2
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.0e-60 235.7 327 92.4
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.2e-59 233.0 345 77.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 9.3e-59 231.5 327 91.4
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 3.5e-58 229.6 327 91.4
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 7.9e-58 228.4 327 88.7
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.5e-56 224.2 327 90.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.9e-56 223.8 321 89.7
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.5e-56 223.4 329 90.0
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.3e-56 223.0 319 91.8
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.3e-56 222.6 327 89.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.2e-55 220.3 319 91.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.8e-55 219.9 327 89.3
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.7e-55 219.5 327 89.0
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.8e-55 219.2 328 89.9
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 6.3e-55 218.8 319 90.9
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.8e-54 217.2 322 91.6
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.8e-54 217.2 322 91.6
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.8e-54 217.2 327 88.4
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.1e-54 216.1 324 88.9
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 9.0e-54 214.9 316 92.7
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 9.0e-54 214.9 323 87.6
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 91.3
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.0e-53 213.8 315 92.1
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.0e-53 213.8 328 89.6
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.0e-53 213.8 319 91.8
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.0e-53 213.8 327 88.4
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.0e-53 213.8 315 92.1
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.4e-53 213.0 319 91.8
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 3.4e-53 213.0 323 91.0
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 3.4e-53 213.0 323 91.0
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 90.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 4.5e-53 212.6 310 89.0
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 90.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.7e-53 211.8 320 91.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.0e-52 211.5 319 89.3
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.0e-52 211.5 323 90.7
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.3e-52 211.1 321 87.5
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.7e-52 210.7 320 90.9
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 90.3
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 2.9e-52 209.9 317 91.5
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.8e-52 209.5 321 91.3
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.8e-52 209.5 323 90.7
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.0e-52 209.1 315 91.4
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.0e-52 209.1 323 90.4
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.4e-51 207.6 310 92.6
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.9e-51 207.2 319 91.8
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 321 88.8
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.5e-51 206.8 312 91.7
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 91.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 91.6
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 3.2e-51 206.5 319 90.0
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 3.2e-51 206.5 324 89.5
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 90.4
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 90.4
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 4.2e-51 206.1 321 88.2
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.2e-51 206.1 323 89.5
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 5.5e-51 205.7 321 88.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.2e-51 205.3 321 90.0
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 7.2e-51 205.3 321 89.7
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 9.4e-51 204.9 322 90.4
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.2e-50 204.5 325 80.6
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.2e-50 204.5 309 91.6
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.6e-50 204.1 321 90.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.1e-50 203.8 316 90.2
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 2.1e-50 203.8 321 90.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.7e-50 203.4 318 90.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.7e-50 203.4 321 89.7
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 4.6e-50 202.6 318 90.3
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 4.6e-50 202.6 320 90.3
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 4.6e-50 202.6 321 90.3
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 7.9e-50 201.8 317 89.6
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 7.9e-50 201.8 312 91.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.4e-49 201.1 325 87.7
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.4e-49 201.1 331 87.9
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.4e-49 201.1 305 90.5
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.0e-49 199.9 242 90.1
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.9e-49 199.5 321 76.3
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.9e-49 199.5 319 89.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 3.9e-49 199.5 321 89.7
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 3.9e-49 199.5 340 60.6
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 6.7e-49 198.7 323 89.2
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.8e-49 198.4 321 87.2
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.1e-48 198.0 319 90.0
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.0e-48 197.2 318 89.3
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 2.5e-48 196.8 321 89.7
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 3.3e-48 196.4 240 90.4
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.3e-48 196.1 317 81.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 9.7e-48 194.9 319 81.5
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.7e-47 194.1 332 86.1
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.2e-47 193.7 243 87.7
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.8e-47 193.4 296 93.6
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.7e-47 193.0 361 66.5
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-47 192.6 329 80.2
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-47 192.6 329 80.2
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.4e-46 191.0 319 88.7
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.4e-46 190.3 296 91.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.4e-46 190.3 304 91.4
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.3e-46 189.1 348 63.5
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.1e-43 181.4 323 85.8
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.4e-43 181.0 326 83.1
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.9e-43 180.6 315 87.6
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.5e-43 180.3 327 53.8
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.5e-43 180.3 320 84.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.2e-43 179.9 243 69.5
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 4.2e-43 179.5 101 85.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 9.4e-43 178.3 315 87.3
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.7e-42 176.8 316 85.4
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.6e-42 176.4 340 83.5
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.0e-41 174.9 240 84.6
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.0e-41 174.9 240 84.6
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.8e-41 174.1 320 86.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.3e-41 173.7 318 87.1
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 8.8e-41 171.8 340 75.6
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.0e-40 170.6 101 81.2
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.3e-40 169.9 93 86.0
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.7e-40 169.1 318 83.3
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 7.4e-40 168.7 319 84.6
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.4e-40 168.7 95 86.3
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.7e-40 168.3 95 84.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.7e-40 168.3 95 84.2
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.3e-39 167.9 324 71.3
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.3e-39 167.9 94 87.2
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-39 167.5 97 83.5
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.2e-39 167.2 322 82.3
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.2e-39 167.2 319 85.9
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.8e-39 166.0 314 70.4
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.8e-39 166.0 104 80.8
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 6.3e-39 165.6 343 79.0
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.4e-38 164.5 242 85.5
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.8e-38 164.1 93 84.9
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.8e-38 164.1 93 84.9
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.1e-38 162.9 104 79.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 9.1e-38 161.8 313 85.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 2.0e-37 160.6 95 81.1
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.0e-37 160.6 313 82.4
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 3.5e-37 159.8 99 77.8
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 5.5e-35 152.5 239 82.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.7e-31 141.0 242 78.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.8e-31 140.2 73 89.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.0e-29 134.0 91 67.0
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.8e-28 129.8 303 79.5
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 6.1e-26 122.5 325 74.5
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 4.0e-25 119.8 73 78.1
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-22 111.7 275 79.6
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-19 101.7 87 59.8
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.5e-19 99.4 65 73.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-17 95.1 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.8e-17 94.4 64 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 3.4e-16 90.1 64 62.5
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 4.9e-15 86.3 100 53.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 4.1e-14 83.2 100 51.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.0e-14 82.4 117 86.3
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.5e-13 79.7 179 88.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 5.9e-13 79.3 75 53.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 5.9e-13 79.3 50 74.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.0e-12 78.6 241 71.0
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-12 78.2 48 81.2
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 4.2e-11 73.2 117 48.7
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.2e-10 71.6 42 78.6
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 3.6e-10 70.1 45 77.8
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 8.0e-10 68.9 42 78.6
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 6.8e-09 65.9 42 76.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-07 60.8 40 72.5


User provided reference genes

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