Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.8e-69 266.2 175 100.0
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.7e-65 252.3 160 96.2
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.2e-62 242.7 160 92.5
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 5.0e-59 231.5 157 89.8
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 5.0e-59 231.5 157 89.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 5.0e-59 231.5 157 89.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 5.0e-59 231.5 157 89.8
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 5.0e-59 231.5 157 89.8
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.5e-58 229.2 175 82.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.3e-54 216.9 162 85.2
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.8e-48 194.5 164 80.5
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 9.8e-47 190.7 160 78.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.8e-46 189.1 162 75.9
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.1e-45 185.7 160 76.9
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.1e-45 185.7 160 76.9
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 3.1e-45 185.7 160 78.1
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 4.1e-45 185.3 160 76.2
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.6e-44 183.3 160 76.2
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.0e-44 183.0 164 70.7
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.7e-44 182.6 160 76.2
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.5e-44 182.2 162 70.4
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 7.7e-44 181.0 153 75.8
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.8e-43 178.7 152 73.0
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.8e-43 178.7 162 71.0
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.5e-42 176.8 158 69.6
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.9e-42 176.4 153 75.2
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 4.2e-42 175.3 153 73.2
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 5.6e-42 174.9 162 68.5
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 7.2e-42 174.5 156 56.4
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.6e-41 172.2 159 68.6
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.3e-40 169.5 161 72.0
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.0e-40 169.1 150 70.0
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.2e-39 167.2 151 66.2
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.0e-39 166.4 152 69.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.3e-38 163.7 131 75.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.3e-38 163.7 147 70.7
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.3e-38 163.7 150 68.0
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-38 163.7 148 68.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 3.2e-37 159.1 154 67.5
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 4.1e-37 158.7 162 66.7
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.1e-37 158.7 148 67.6
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 9.2e-37 157.5 177 62.1
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.6e-36 156.8 227 41.4
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.0e-36 156.4 155 52.9
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 2.7e-36 156.0 150 64.7
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.9e-36 154.8 152 53.9
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.3e-35 153.7 152 53.3
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 150 66.0
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.3e-35 153.7 135 71.1
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 136 70.6
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.3e-35 152.9 148 66.2
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.3e-35 152.9 148 66.2
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 2.9e-35 152.5 153 64.1
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 5.0e-35 151.8 139 56.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 5.0e-35 151.8 159 61.6
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 148 65.5
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.5e-34 149.4 150 65.3
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 4.3e-34 148.7 126 72.2
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 4.3e-34 148.7 151 61.6
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 7.3e-34 147.9 162 64.8
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 7.3e-34 147.9 138 68.8
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.6e-33 146.7 156 50.6
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.8e-33 146.0 177 60.5
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.8e-33 146.0 164 59.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.6e-33 145.6 131 71.0
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.1e-32 142.5 170 48.8
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 3.1e-32 142.5 162 46.9
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.1e-32 142.5 162 46.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.1e-32 142.5 162 46.9
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.0e-32 142.1 159 47.2
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 5.2e-32 141.7 148 50.7
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 6.8e-32 141.4 164 60.4
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 8.9e-32 141.0 148 64.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 8.9e-32 141.0 136 66.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.5e-31 140.2 162 46.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.4e-31 139.0 162 63.0
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 5.8e-31 138.3 151 62.9
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.9e-30 136.0 155 60.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 4.9e-30 135.2 153 47.1
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.9e-30 135.2 162 58.0
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 6.4e-30 134.8 152 60.5
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.1e-29 134.0 161 44.7
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 162 56.8
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.9e-29 133.3 161 44.7
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 3.2e-29 132.5 162 58.0
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.2e-29 132.5 162 45.1
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.1e-29 132.1 152 59.9
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 7.0e-29 131.3 152 59.9
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 7.0e-29 131.3 152 59.9
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 7.0e-29 131.3 162 53.7
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 9.2e-29 131.0 161 56.5
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.6e-28 130.2 162 59.3
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.0e-28 129.8 155 46.5
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.0e-28 129.8 142 61.3
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.7e-28 129.4 153 60.1
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 7.8e-28 127.9 155 56.8
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.0e-27 127.5 153 57.5
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.3e-27 126.3 148 55.4
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.3e-27 126.3 155 56.8
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.0e-27 125.9 150 60.7
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 3.9e-27 125.6 152 63.8
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 5.0e-27 125.2 150 58.7
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 6.6e-27 124.8 150 59.3
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 6.6e-27 124.8 150 59.3
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.1e-26 124.0 151 58.9
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.1e-26 124.0 153 43.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.1e-26 124.0 152 52.0
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.5e-26 122.9 161 53.4
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 3.3e-26 122.5 162 53.1
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.3e-26 122.1 151 54.3
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 7.3e-26 121.3 161 54.0
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 9.5e-26 120.9 160 41.9
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.2e-25 120.6 151 53.0
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.2e-25 120.6 151 55.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.8e-25 119.4 148 54.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 3.6e-25 119.0 149 55.7
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.6e-25 119.0 159 53.5
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 6.2e-25 118.2 62 80.6
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.1e-24 117.5 163 52.1
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.1e-24 117.5 148 58.1
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.8e-24 116.7 144 41.0
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 3.1e-24 115.9 152 52.0
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 3.1e-24 115.9 150 54.0
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 4.0e-24 115.5 146 56.2
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 4.0e-24 115.5 161 50.9
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.2e-23 114.0 146 56.8
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.2e-23 114.0 146 56.8
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.5e-23 113.6 160 56.2
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.5e-23 113.6 160 56.2
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 3.4e-23 112.5 135 45.2
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 5.8e-23 111.7 151 37.7
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 9.8e-23 110.9 160 51.9
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 9.8e-23 110.9 58 79.3
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.3e-22 110.5 150 40.0
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.3e-22 110.5 135 57.0
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 2.9e-22 109.4 153 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 3.2e-21 105.9 111 45.0
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.5e-20 102.4 131 56.5
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 7.8e-20 101.3 58 70.7
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.6e-19 97.8 149 54.4
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.1e-18 97.4 104 67.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.3e-14 84.0 116 36.2
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.7e-14 82.4 119 38.7
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.9e-13 80.1 116 36.2
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 4.1e-13 79.0 53 64.2
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.2e-12 77.4 59 67.8
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.7e-12 76.3 141 33.3
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 3.0e-11 72.8 67 56.7
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.5e-10 70.5 108 34.3
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 5.6e-10 68.6 108 33.3


User provided reference genes

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