Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 1.7e-184 649.4 390 100.0
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 5.2e-157 558.1 411 83.7
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 1.7e-139 500.0 397 72.5
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 2.2e-107 393.3 401 62.8
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 1.3e-104 384.0 406 63.3
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 2.6e-100 369.8 410 59.3
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 3.4e-100 369.4 411 56.9
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.0e-99 367.9 410 60.5
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 5.5e-98 362.1 409 61.4
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 4.6e-97 359.0 413 57.4
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 7.9e-97 358.2 408 56.1
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 2.3e-96 356.7 410 55.1
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 6.7e-96 355.1 412 57.3
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 4.3e-95 352.4 406 55.7
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 4.3e-95 352.4 406 55.7
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 7.4e-95 351.7 384 59.9
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 3.1e-93 346.3 403 54.8
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 1.0e-91 341.3 416 57.2
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 1.3e-91 340.9 410 56.6
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 1.7e-91 340.5 415 57.6
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 1.9e-87 327.0 395 54.7
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 1.3e-78 297.7 386 53.1
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 9.1e-77 291.6 371 49.3
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 1.2e-76 291.2 395 46.6
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 5.0e-75 285.8 381 52.2
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 5.5e-74 282.3 391 50.4
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 5.7e-71 272.3 383 48.8
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 7.4e-71 271.9 386 44.3
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 9.7e-71 271.6 392 51.8
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 1.7e-70 270.8 388 49.7
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 4.1e-69 266.2 386 49.7
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 4.1e-69 266.2 386 49.5
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 4.5e-68 262.7 381 45.9
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 3.8e-67 259.6 386 49.5
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 6.5e-67 258.8 384 45.1
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.1e-66 258.1 379 50.7
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 9.4e-66 255.0 378 51.9
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 1.6e-65 254.2 380 43.7
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 6.1e-65 252.3 390 49.0
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 1.8e-64 250.8 394 49.0
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 6.7e-64 248.8 383 49.1
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 8.8e-64 248.4 369 45.0
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 4.4e-63 246.1 389 41.4
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 7.5e-63 245.4 278 56.5
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 3.7e-62 243.0 386 43.5
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 4.8e-62 242.7 383 48.6
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 4.8e-62 242.7 385 46.5
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 4.8e-62 242.7 396 46.7
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 3.1e-61 240.0 380 48.2
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 9.1e-61 238.4 385 42.1
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 2.7e-60 236.9 381 42.5
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 1.7e-59 234.2 381 46.7
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 2.9e-59 233.4 392 45.4
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 1.1e-58 231.5 388 42.0
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 3.2e-58 229.9 380 47.9
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 4.7e-57 226.1 284 52.8
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 5.2e-56 222.6 392 46.7
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 5.2e-56 222.6 364 43.4
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 8.8e-56 221.9 421 38.7
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 1.2e-55 221.5 342 50.6
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 1.5e-55 221.1 388 38.9
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 1.5e-55 221.1 364 43.4
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.6e-55 220.3 390 45.4
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 2.6e-55 220.3 381 40.9
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 5.7e-55 219.2 386 40.4
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 9.8e-55 218.4 382 40.1
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 1.3e-54 218.0 383 45.7
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 2.8e-54 216.9 363 39.1
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 3.7e-54 216.5 385 41.8
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 8.3e-54 215.3 273 49.1
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 3.8e-51 206.5 369 38.5
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 6.5e-51 205.7 383 39.9
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 3.2e-50 203.4 383 38.6
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.6e-49 201.1 341 40.2
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 8.0e-49 198.7 349 46.4
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 3.0e-48 196.8 283 50.9
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 6.8e-48 195.7 354 39.8
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 1.2e-47 194.9 309 46.6
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 3.4e-47 193.4 309 47.2
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 3.4e-47 193.4 325 42.8
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 5.7e-47 192.6 373 37.5
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 4.9e-46 189.5 373 36.7
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 4.9e-46 189.5 402 37.1
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 1.1e-45 188.3 398 37.2
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 1.4e-45 188.0 385 44.7
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 7.0e-45 185.7 341 38.4
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 4.5e-44 183.0 380 39.7
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 1.7e-43 181.0 380 40.3
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 2.3e-43 180.6 206 55.3
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 1.1e-42 178.3 366 41.5
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.5e-42 177.9 343 44.0
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 3.3e-42 176.8 339 37.8
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 1.2e-41 174.9 371 36.1
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.6e-41 174.5 388 43.8
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 1.6e-41 174.5 385 36.9
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 2.1e-41 174.1 383 42.3
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 2.6e-39 167.2 375 35.7
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 1.7e-38 164.5 318 36.2
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 4.9e-38 162.9 366 39.3
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 4.9e-38 162.9 392 33.9
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 5.4e-37 159.5 320 37.2
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 7.8e-36 155.6 326 34.0
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 3.0e-35 153.7 221 44.8
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 3.6e-33 146.7 372 37.6
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 8.0e-33 145.6 325 33.8
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 8.9e-32 142.1 370 34.6
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 3.4e-31 140.2 210 44.3
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 9.8e-31 138.7 329 32.8
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 3.0e-27 127.1 347 34.3
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 7.8e-20 102.4 80 75.0
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 1.2e-17 95.1 380 30.0
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 8.1e-17 92.4 406 30.3
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 8.1e-17 92.4 406 30.3
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 2.3e-16 90.9 302 31.5
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 2.9e-14 84.0 131 42.0
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 6.6e-11 72.8 114 39.5
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.4e-08 65.1 84 44.0
CARHR274940 Cardamine hirsuta HOM05D001456 ORTHO05D014991 2.0e-07 61.2 296 26.7


User provided reference genes

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