Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61110 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 2.1e-80 302.4 162 100.0
AL8G37750 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 1.6e-48 196.4 172 70.3
AL8G37740 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 1.3e-21 107.1 123 49.6
AT5G61100 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 2.7e-19 99.4 104 51.9
Carub.0008s2178 Capsella rubella HOM05D009441 ORTHO05D010605 1.5e-17 93.6 118 44.9
C02p61360 Brassica napus HOM05D009441 ORTHO05D010605 4.8e-16 88.6 80 52.5
BraA02t09085Z Brassica rapa HOM05D009441 ORTHO05D010605 4.8e-16 88.6 80 52.5
A02p41420 Brassica napus HOM05D009441 ORTHO05D010605 1.4e-15 87.0 80 51.2
Carub.0008s2177 Capsella rubella HOM05D009441 ORTHO05D010605 1.4e-15 87.0 132 40.2
CARHR274790 Cardamine hirsuta HOM05D009441 ORTHO05D010605 3.1e-15 85.9 89 49.4
CARHR274800 Cardamine hirsuta HOM05D009441 ORTHO05D010605 4.1e-15 85.5 175 38.3
BolC2t12185H Brassica oleracea HOM05D009441 ORTHO05D010605 5.4e-15 85.1 80 52.5
BcaB07g34219 Brassica carinata HOM05D007909 ORTHO05D010605 2.2e-13 79.7 91 44.0
CARHR205180 Cardamine hirsuta HOM05D009441 ORTHO05D010605 2.2e-13 79.7 61 55.7
Aa31LG3G18530 Aethionema arabicum HOM05D000016 ORTHO05D000487 6.5e-13 78.2 106 34.9
A10p28620 Brassica napus HOM05D009441 ORTHO05D010605 8.5e-13 77.8 130 36.9
BolC2t12184H Brassica oleracea HOM05D009441 ORTHO05D010605 4.2e-12 75.5 51 56.9
BraA10t44911Z Brassica rapa HOM05D009441 ORTHO05D010605 5.5e-12 75.1 129 36.4
Sp6g34940 Schrenkiella parvula HOM05D009441 ORTHO05D010605 7.2e-12 74.7 132 35.6
BcaC03g18076 Brassica carinata HOM05D009441 ORTHO05D010605 9.5e-12 74.3 49 57.1
C09p68910 Brassica napus HOM05D009441 ORTHO05D010605 9.5e-12 74.3 130 36.2
Sp2g24365 Schrenkiella parvula HOM05D007909 ORTHO05D010605 1.2e-11 73.9 168 35.1
AL6G18350 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 1.6e-11 73.6 81 44.4
Carub.0006s0689 Capsella rubella HOM05D009441 ORTHO05D010605 6.1e-11 71.6 96 39.6
BraA02t09084Z Brassica rapa HOM05D009441 ORTHO05D010605 8.0e-11 71.2 51 52.9
AT5G08005 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 1.4e-10 70.5 130 36.9
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 5.2e-10 68.6 78 39.7
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 6.8e-10 68.2 109 37.6
A02p41410 Brassica napus HOM05D009441 ORTHO05D010605 2.6e-09 66.2 51 51.0
A02p41400 Brassica napus HOM05D007909 ORTHO05D010605 5.7e-09 65.1 136 34.6
A03p46770 Brassica napus HOM05D007909 ORTHO05D010605 5.7e-09 65.1 135 31.9
Ciclev10020157m.g Citrus clementina HOM05D001093 ORTHO05D010605 5.7e-09 65.1 48 52.1
Gohir.A12G182300 Gossypium hirsutum HOM05D004287 ORTHO05D004569 5.7e-09 65.1 72 38.9
Gohir.D12G185200 Gossypium hirsutum HOM05D004287 ORTHO05D004569 1.3e-08 63.9 72 37.5
Gorai.008G198600 Gossypium raimondii HOM05D004287 ORTHO05D004569 1.3e-08 63.9 72 37.5
C07p44810 Brassica napus HOM05D007909 ORTHO05D010605 2.2e-08 63.2 133 33.8
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 2.2e-08 63.2 67 34.3
CANSAT80G0158 Cannabis sativa HOM05D000539 ORTHO05D000233 3.7e-08 62.4 104 31.7
Aqoxy3G03628 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 8.3e-08 61.2 47 46.8
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 8.3e-08 61.2 50 44.0
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 8.3e-08 61.2 50 42.0
BcaC06g33178 Brassica carinata HOM05D007909 ORTHO05D010605 1.1e-07 60.8 136 32.4
Lsat_1_v5_gn_1_13501 Lactuca sativa HOM05D001093 ORTHO05D010605 1.4e-07 60.5 56 39.3
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 2.4e-07 59.7 48 43.8
QL10p019356 Quercus lobata HOM05D001093 ORTHO05D010605 2.4e-07 59.7 57 40.4
TPR.G12267 Trifolium pratense HOM05D008195 ORTHO05D010605 2.4e-07 59.7 69 39.1
BraA03t13799Z Brassica rapa HOM05D007909 ORTHO05D010605 4.1e-07 58.9 147 29.3
EL10Ac5g11122 Beta vulgaris HOM05D001093 ORTHO05D000743 5.4e-07 58.5 101 30.7
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 5.4e-07 58.5 53 43.4
MBI19_g34071_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 5.4e-07 58.5 76 39.5
MBI19_g36253_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 5.4e-07 58.5 76 39.5
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 5.4e-07 58.5 101 27.7
Hund09906 Selenicereus undatus HOM05D009441 ORTHO05D010605 7.0e-07 58.2 79 36.7
Phvul.009G191600 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 9.2e-07 57.8 79 30.4
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.2e-06 57.4 47 44.7
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 2.0e-06 56.6 49 40.8
CANSAT80G2675 Cannabis sativa HOM05D002262 ORTHO05D000482 2.7e-06 56.2 52 44.2
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 3.5e-06 55.8 93 29.0
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 3.5e-06 55.8 97 27.8
Prupe.2G329000 Prunus persica HOM05D001093 ORTHO05D000743 3.5e-06 55.8 64 39.1
Prupe.5G204000 Prunus persica HOM05D001093 ORTHO05D010605 3.5e-06 55.8 122 27.0
HPP92_011027 Vanilla planifolia HOM05D009441 ORTHO05D010605 3.5e-06 55.8 75 36.0
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 4.5e-06 55.5 55 41.8
CANSAT80G0086 Cannabis sativa HOM05D007909 ORTHO05D000743 4.5e-06 55.5 52 42.3
COL.COLO4_17047 Corchorus olitorius HOM05D001093 ORTHO05D000743 4.5e-06 55.5 51 43.1
Gorai.008G226700 Gossypium raimondii HOM05D001093 ORTHO05D000743 5.9e-06 55.1 51 43.1


User provided reference genes

Program Settings