Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 1.2e-100 369.8 179 100.0
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 7.3e-82 307.4 179 82.1
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 1.3e-78 296.6 179 80.4
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 7.1e-77 290.8 179 78.8
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 3.5e-76 288.5 179 78.2
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.3e-75 286.6 179 77.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 5.1e-75 284.6 171 78.9
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 4.8e-73 278.1 179 73.7
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.1e-72 276.9 169 74.6
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 1.4e-72 276.6 176 75.0
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.4e-72 276.6 179 71.5
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.8e-72 276.2 179 71.5
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 2.4e-72 275.8 179 73.2
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.4e-72 275.8 176 73.9
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 3.1e-72 275.4 178 73.0
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.2e-71 273.5 171 74.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.2e-70 269.2 174 75.3
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 3.8e-70 268.5 168 77.4
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.1e-69 266.9 170 70.0
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 2.4e-69 265.8 178 71.3
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.4e-69 265.8 170 70.0
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 2.4e-69 265.8 169 72.2
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.2e-69 265.4 169 71.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 5.4e-69 264.6 168 76.2
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 5.4e-69 264.6 168 76.2
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 5.4e-69 264.6 169 71.0
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 7.1e-69 264.2 168 70.8
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 9.3e-69 263.8 168 76.2
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 9.3e-69 263.8 172 69.2
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.6e-68 263.1 175 66.9
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 2.1e-68 262.7 169 70.4
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 7.9e-68 260.8 175 68.6
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.3e-67 260.0 169 69.2
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.8e-67 259.6 169 67.5
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 2.3e-67 259.2 169 68.0
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 2.3e-67 259.2 173 67.6
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.3e-67 259.2 176 67.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 5.1e-67 258.1 168 66.7
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 6.7e-67 257.7 169 70.4
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 6.7e-67 257.7 168 67.9
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 8.7e-67 257.3 169 67.5
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 8.7e-67 257.3 176 65.9
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.1e-66 256.9 176 68.2
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 1.1e-66 256.9 168 68.5
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 1.1e-66 256.9 168 68.5
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 2.5e-66 255.8 168 68.5
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.3e-66 255.4 168 68.5
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 3.3e-66 255.4 168 70.2
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.3e-66 255.4 175 66.3
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 4.3e-66 255.0 168 66.7
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 4.3e-66 255.0 178 66.9
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 4.3e-66 255.0 168 68.5
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 4.3e-66 255.0 168 69.0
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 7.4e-66 254.2 167 68.3
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 7.4e-66 254.2 167 68.9
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 7.4e-66 254.2 178 65.2
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 9.6e-66 253.8 177 66.7
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 1.3e-65 253.4 167 69.5
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.3e-65 253.4 168 66.7
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.3e-65 253.4 168 68.5
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.6e-65 253.1 169 67.5
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.6e-65 253.1 168 67.9
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.6e-65 253.1 169 65.7
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 2.1e-65 252.7 169 66.3
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.1e-65 252.7 166 66.3
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.8e-65 252.3 166 68.7
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.8e-65 252.3 168 67.3
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 2.8e-65 252.3 168 67.9
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.8e-65 252.3 168 67.9
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 2.8e-65 252.3 172 64.0
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 2.8e-65 252.3 168 67.9
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 4.8e-65 251.5 169 66.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 4.8e-65 251.5 178 64.6
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 6.2e-65 251.1 186 61.8
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 6.2e-65 251.1 168 67.3
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 6.2e-65 251.1 168 66.1
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.1e-64 250.4 168 64.9
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 1.4e-64 250.0 167 67.7
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.4e-64 250.0 178 64.0
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.8e-64 249.6 168 67.3
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 2.4e-64 249.2 166 67.5
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.4e-64 249.2 168 66.1
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 3.1e-64 248.8 166 66.9
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 4.0e-64 248.4 176 65.3
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 5.3e-64 248.1 167 67.1
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 6.9e-64 247.7 168 65.5
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.2e-63 246.9 168 64.3
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.5e-63 246.5 167 65.9
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 3.4e-63 245.4 178 63.5
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 3.4e-63 245.4 169 65.1
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 3.4e-63 245.4 170 65.9
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 3.4e-63 245.4 169 66.9
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 4.5e-63 245.0 160 73.8
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 4.5e-63 245.0 168 64.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.8e-63 244.6 169 65.1
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 5.8e-63 244.6 167 67.1
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 5.8e-63 244.6 166 66.9
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 5.8e-63 244.6 166 66.9
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.0e-62 243.8 167 65.9
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.2e-62 242.7 166 65.1
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.2e-62 242.7 167 64.1
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 2.2e-62 242.7 168 63.7
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.9e-62 242.3 167 64.1
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 2.9e-62 242.3 167 66.5
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 4.9e-62 241.5 168 63.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 6.5e-62 241.1 168 64.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 6.5e-62 241.1 167 65.3
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 8.4e-62 240.7 163 68.7
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 3.2e-61 238.8 167 64.1
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 3.2e-61 238.8 178 60.7
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.2e-61 238.4 167 65.3
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.2e-61 238.4 165 66.7
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 5.5e-61 238.0 211 55.5
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 7.1e-61 237.7 167 65.3
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.2e-60 236.9 162 67.3
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.2e-60 236.9 166 63.9
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.6e-60 236.5 170 63.5
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.3e-59 233.4 167 62.9
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 2.3e-59 232.6 168 61.9
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.3e-58 228.8 239 49.4
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 5.7e-58 228.0 168 61.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 7.4e-58 227.6 166 66.3
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.6e-57 226.5 170 60.0
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 2.1e-57 226.1 152 67.8
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.1e-56 223.8 166 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 5.3e-56 221.5 163 61.3
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 6.9e-56 221.1 172 58.7
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.3e-54 216.9 165 59.4
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 2.5e-53 212.6 168 58.9
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 2.1e-52 209.5 168 58.3
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.3e-51 206.8 169 58.6
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.3e-51 206.1 174 55.7
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 3.9e-51 205.3 166 56.0
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 7.4e-50 201.1 168 54.8
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 3.1e-48 195.7 167 50.9
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.7e-41 173.3 173 48.0
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.8e-41 171.8 108 69.4
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.6e-39 166.0 106 69.8
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 3.8e-38 162.2 121 61.2
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.8e-38 162.2 111 61.3
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.0e-38 161.8 109 67.0
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 1.8e-35 153.3 100 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.3e-35 152.9 103 69.9
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 3.0e-35 152.5 100 65.0
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 5.7e-34 148.3 170 45.3
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-33 147.1 100 64.0
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.7e-33 146.7 108 61.1
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.7e-33 146.7 108 61.1
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.1e-32 144.1 85 77.6
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.4e-32 142.9 107 60.7
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 3.1e-32 142.5 172 45.9
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 9.7e-26 120.9 157 38.2
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 3.7e-25 119.0 172 42.4
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-19 100.9 137 43.8
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-19 100.9 73 60.3
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.7e-17 93.6 180 32.2
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 1.4e-16 90.5 123 40.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 7.0e-16 88.2 79 51.9
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 5.5e-13 78.6 61 59.0
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.2e-13 78.2 63 55.6
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 8.8e-11 71.2 59 49.2
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 9.8e-10 67.8 61 47.5
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.1e-08 64.3 36 75.0
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.4e-08 63.9 61 50.8
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.2e-07 60.8 48 60.4


User provided reference genes

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