Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 5.1e-72 275.4 293 100.0
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 4.2e-42 176.0 151 78.1
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 1.9e-31 140.6 151 58.3
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 1.6e-22 110.9 164 53.0
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 2.4e-21 107.1 138 52.9
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 2.0e-20 104.0 68 83.8
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 2.6e-20 103.6 67 86.6
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 3.4e-20 103.2 142 53.5
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 2.7e-17 93.6 67 76.1
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 6.1e-17 92.4 141 47.5
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 5.1e-16 89.4 64 76.6
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 5.1e-16 89.4 64 76.6
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 5.1e-16 89.4 64 76.6
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 5.1e-16 89.4 64 76.6
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 1.1e-15 88.2 146 45.2
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.5e-15 87.8 71 70.4
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 3.3e-15 86.7 64 73.4
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 3.3e-15 86.7 71 67.6
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 4.3e-15 86.3 71 67.6
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 6.3e-14 82.4 152 42.1
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 8.2e-14 82.0 68 66.2
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 8.2e-14 82.0 61 65.6
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.8e-13 80.9 170 41.8
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 2.4e-13 80.5 61 63.9
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 5.3e-13 79.3 63 66.7
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 9.1e-13 78.6 61 67.2
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 1.2e-12 78.2 143 39.9
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 2.0e-12 77.4 66 62.1
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 3.4e-12 76.6 136 39.7
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 5.9e-12 75.9 149 39.6
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 5.9e-12 75.9 60 66.7
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 7.7e-12 75.5 63 63.5
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 1.0e-11 75.1 68 55.9
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 1.0e-11 75.1 60 63.3
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 1.7e-11 74.3 60 65.0
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 2.2e-11 73.9 64 59.4
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 2.9e-11 73.6 69 59.4
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 3.8e-11 73.2 110 41.8
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 5.0e-11 72.8 152 36.2
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 5.0e-11 72.8 152 36.2
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 6.5e-11 72.4 62 61.3
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 8.5e-11 72.0 105 47.6
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 1.1e-10 71.6 64 57.8
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 1.9e-10 70.9 63 57.1
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 2.5e-10 70.5 69 58.0
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 2.5e-10 70.5 64 57.8
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 3.2e-10 70.1 64 53.1
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 4.2e-10 69.7 139 36.0
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 4.2e-10 69.7 64 62.5
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 4.2e-10 69.7 172 37.8
Phvul.001G035300 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 4.2e-10 69.7 63 54.0
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 4.2e-10 69.7 59 62.7
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 5.5e-10 69.3 63 55.6
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 7.2e-10 68.9 132 37.9
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 7.2e-10 68.9 152 39.5
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 9.4e-10 68.6 68 52.9
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 9.4e-10 68.6 68 54.4
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.2e-09 68.2 155 37.4
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 1.2e-09 68.2 63 55.6
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 1.6e-09 67.8 145 37.2
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 2.1e-09 67.4 55 61.8
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 2.1e-09 67.4 164 37.8
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 2.7e-09 67.0 60 60.0
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 2.7e-09 67.0 67 50.7
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 2.7e-09 67.0 63 55.6
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 2.7e-09 67.0 129 41.9
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 2.7e-09 67.0 64 54.7
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 2.7e-09 67.0 62 56.5
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 4.7e-09 66.2 63 54.0
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 4.7e-09 66.2 64 51.6
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 6.1e-09 65.9 65 56.9
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 6.1e-09 65.9 56 62.5
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 7.9e-09 65.5 157 37.6
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 7.9e-09 65.5 60 60.0
PGR102G0834 Punica granatum HOM05D007431 ORTHO05D008438 7.9e-09 65.5 68 51.5
TPR.G26566 Trifolium pratense HOM05D007431 ORTHO05D008438 7.9e-09 65.5 124 37.1
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 1.0e-08 65.1 64 53.1
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 1.4e-08 64.7 67 49.3
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 1.4e-08 64.7 67 49.3
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 1.8e-08 64.3 60 60.0
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.8e-08 64.3 154 36.4
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 3.0e-08 63.5 127 34.6
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 3.0e-08 63.5 127 34.6
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 3.9e-08 63.2 64 51.6
MBI15_g23247_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 3.9e-08 63.2 133 39.1
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 3.9e-08 63.2 65 53.8
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 5.1e-08 62.8 144 31.9
Nitab4.5_0002380g0010 Nicotiana tabacum HOM05D015294 ORTHO05D018867 5.1e-08 62.8 64 48.4
Sabra19G0107900 Salix brachista HOM05D007431 ORTHO05D008438 6.7e-08 62.4 67 47.8
TWI53G0129 Tripterygium wilfordii HOM05D007431 ORTHO05D008438 6.7e-08 62.4 60 58.3
CDE01G0792 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 1.1e-07 61.6 65 50.8
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 1.1e-07 61.6 143 35.0
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 1.1e-07 61.6 137 39.4
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 2.0e-07 60.8 68 47.1
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 4.4e-07 59.7 64 50.0
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 7.4e-07 58.9 64 48.4
Migut.E00592 Erythranthe guttata HOM05D007431 ORTHO05D008438 7.4e-07 58.9 69 44.9
Migut.E00657 Erythranthe guttata HOM05D007431 ORTHO05D008438 7.4e-07 58.9 69 44.9
Nitab4.5_0004839g0050 Nicotiana tabacum HOM05D015294 ORTHO05D018867 1.3e-06 58.2 158 29.7
Peaxi162Scf00616g00064 Petunia axillaris HOM05D015294 ORTHO05D018867 1.7e-06 57.8 58 51.7
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 2.8e-06 57.0 181 29.8
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 2.8e-06 57.0 160 35.0
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 3.7e-06 56.6 64 43.8
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 3.7e-06 56.6 64 43.8
Psat2g042560 Pisum sativum HOM05D007431 ORTHO05D008438 3.7e-06 56.6 50 64.0
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 4.8e-06 56.2 58 53.4
ECA232G0929 Erigeron canadensis HOM05D007431 ORTHO05D008438 6.3e-06 55.8 131 35.1
SGA_v2.0_scaffold65G22165 Striga asiatica HOM05D007431 ORTHO05D008438 6.3e-06 55.8 55 47.3


User provided reference genes

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