Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 9.5e-56 220.3 145 100.0
Sp6g21220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 4.6e-42 174.9 146 76.7
BcaC04g19763 Brassica carinata HOM05D008503 ORTHO05D001075 1.9e-40 169.5 144 77.1
C09p51910 Brassica napus HOM05D008503 ORTHO05D001075 1.9e-40 169.5 144 77.1
BolC9t58054H Brassica oleracea HOM05D008503 ORTHO05D001075 1.9e-40 169.5 144 77.1
Thhalv10014947m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 9.6e-40 167.2 147 83.0
A10p16720 Brassica napus HOM05D008503 ORTHO05D001075 1.4e-38 163.3 142 83.1
BraA10t43753Z Brassica rapa HOM05D008503 ORTHO05D001075 1.4e-38 163.3 142 77.5
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 2.4e-38 162.5 148 81.8
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 1.6e-34 149.8 144 80.6
BcaB08g36251 Brassica carinata HOM05D008503 ORTHO05D001075 5.6e-32 141.4 142 71.1
A02p07090 Brassica napus HOM05D008503 ORTHO05D001075 6.9e-30 134.4 142 71.1
BraA02t05789Z Brassica rapa HOM05D008503 ORTHO05D001075 6.9e-30 134.4 142 71.1
BcaB05g22516 Brassica carinata HOM05D008503 ORTHO05D001075 2.6e-29 132.5 142 68.3
BolC2t07344H Brassica oleracea HOM05D008503 ORTHO05D001075 1.6e-26 123.2 142 73.9
BcaC03g14006 Brassica carinata HOM05D008503 ORTHO05D001075 2.7e-26 122.5 142 73.9
C02p12440 Brassica napus HOM05D008503 ORTHO05D001075 2.7e-26 122.5 142 73.9
AT3G46613 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 1.3e-25 120.2 145 69.7
BcaC09g49758 Brassica carinata HOM05D008503 ORTHO05D001075 1.9e-19 99.8 159 57.9
C01p33250 Brassica napus HOM05D008503 ORTHO05D001075 2.7e-18 95.9 146 52.1
CARHR155200 Cardamine hirsuta HOM05D008503 ORTHO05D001075 5.1e-17 91.7 116 61.2
BcaB05g23545 Brassica carinata HOM05D008503 ORTHO05D001075 7.4e-16 87.8 64 73.4
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 2.2e-15 86.3 150 40.7
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 3.4e-13 79.0 80 57.5
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 4.5e-13 78.6 145 39.3
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 4.5e-13 78.6 145 39.3
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 4.5e-13 78.6 77 55.8
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 2.2e-12 76.3 140 40.7
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 2.9e-12 75.9 142 40.1
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 1.1e-11 73.9 69 60.9
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 4.2e-11 72.0 50 68.0
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 5.5e-11 71.6 142 37.3
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 5.5e-11 71.6 48 68.8
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 7.2e-11 71.2 79 50.6
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 9.4e-11 70.9 68 52.9
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-10 70.1 44 68.2
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-10 70.1 44 68.2
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.6e-10 70.1 44 68.2
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 2.1e-10 69.7 140 41.4
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 2.7e-10 69.3 134 35.8
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 3.6e-10 68.9 51 62.7
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 7.9e-10 67.8 145 35.2
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 7.9e-10 67.8 145 35.2
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 1.0e-09 67.4 139 35.3
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 1.8e-09 66.6 73 54.8
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 3.9e-09 65.5 141 35.5
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 3.9e-09 65.5 146 36.3
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 8.8e-09 64.3 68 51.5
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 8.8e-09 64.3 68 51.5
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 8.8e-09 64.3 153 32.7
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 8.8e-09 64.3 50 64.0
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 8.8e-09 64.3 147 39.5
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 1.1e-08 63.9 76 47.4
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 1.1e-08 63.9 69 53.6
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 2.5e-08 62.8 40 65.0
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 3.3e-08 62.4 39 64.1
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 4.3e-08 62.0 37 70.3
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 5.7e-08 61.6 50 52.0
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 5.7e-08 61.6 46 54.3
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 5.7e-08 61.6 43 67.4
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 7.4e-08 61.2 32 75.0
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 7.4e-08 61.2 33 72.7
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 9.7e-08 60.8 34 70.6
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 9.7e-08 60.8 50 52.0
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 9.7e-08 60.8 34 70.6
Eucgr.B02318 Eucalyptus grandis HOM05D008503 ORTHO05D001075 9.7e-08 60.8 38 68.4
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 9.7e-08 60.8 34 70.6
Ah.15g098480 Amaranthus hybridus HOM05D001415 ORTHO05D001075 2.2e-07 59.7 139 34.5
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 2.2e-07 59.7 146 32.9
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 2.8e-07 59.3 61 52.5
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 2.8e-07 59.3 37 64.9
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.7e-07 58.9 143 35.0
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.7e-07 58.9 143 35.0
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.7e-07 58.9 143 35.0
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 3.7e-07 58.9 140 35.7
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 3.7e-07 58.9 68 42.6
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 4.8e-07 58.5 33 72.7
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 4.8e-07 58.5 65 44.6
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-07 58.5 33 69.7
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 8.2e-07 57.8 33 69.7
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 8.2e-07 57.8 43 65.1
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 8.2e-07 57.8 51 56.9
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 8.2e-07 57.8 38 65.8
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 8.2e-07 57.8 32 71.9
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.1e-06 57.4 90 42.2
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.1e-06 57.4 51 49.0
Oeu045612.1 Olea europaea HOM05D001415 ORTHO05D001075 1.1e-06 57.4 63 52.4
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-06 56.6 65 43.1
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 1.8e-06 56.6 65 43.1
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.8e-06 56.6 33 69.7
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 1.8e-06 56.6 86 43.0
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 1.8e-06 56.6 33 69.7
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 2.4e-06 56.2 65 43.1
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 2.4e-06 56.2 65 43.1
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.4e-06 56.2 45 60.0
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.4e-06 56.2 53 54.7
Glyma.15G036400 Glycine max HOM05D001415 ORTHO05D001075 2.4e-06 56.2 71 45.1
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.1e-06 55.8 52 44.2
Rhsim01G0230800 Rhododendron simsii HOM05D001415 ORTHO05D001075 3.1e-06 55.8 83 44.6
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 3.1e-06 55.8 33 69.7
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 4.1e-06 55.5 59 49.2
Glyma.13G338000 Glycine max HOM05D001415 ORTHO05D001075 4.1e-06 55.5 71 45.1
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 5.3e-06 55.1 70 44.3
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 5.3e-06 55.1 31 67.7
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 5.3e-06 55.1 31 67.7
Lsat_1_v5_gn_9_24441 Lactuca sativa HOM05D008503 ORTHO05D001075 5.3e-06 55.1 39 61.5
MBI18_g23947_MAGBIO Magnolia biondii HOM05D008503 ORTHO05D010842 5.3e-06 55.1 41 56.1
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.3e-06 55.1 51 49.0
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 6.9e-06 54.7 66 47.0
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 6.9e-06 54.7 66 47.0
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 6.9e-06 54.7 66 47.0
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 6.9e-06 54.7 32 68.8
AL4G23680 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 9.1e-06 54.3 76 42.1
AT2G29125 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 9.1e-06 54.3 76 42.1
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 9.1e-06 54.3 65 41.5
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 9.1e-06 54.3 32 68.8
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.1e-06 54.3 38 57.9
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.1e-06 54.3 38 57.9
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 9.1e-06 54.3 38 57.9
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 9.1e-06 54.3 63 47.6
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 9.1e-06 54.3 142 31.7


User provided reference genes

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