Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G59360 Arabidopsis thaliana HOM05D012305 ORTHO05D014046 2.6e-75 285.4 155 100.0
AL8G35800 Arabidopsis lyrata HOM05D012305 ORTHO05D014046 8.1e-61 237.3 153 88.2
CARHR285730 Cardamine hirsuta HOM05D012305 ORTHO05D014046 3.0e-55 218.8 155 78.1
Carub.0008s2003 Capsella rubella HOM05D012305 ORTHO05D014046 1.2e-48 196.8 153 75.2
Thhalv10015714m.g Eutrema salsugineum HOM05D012305 ORTHO05D014046 6.9e-44 181.0 154 65.6
BcaC04g19782 Brassica carinata HOM05D012305 ORTHO05D014046 4.6e-40 168.3 157 67.5
C09p51760 Brassica napus HOM05D012305 ORTHO05D014046 4.6e-40 168.3 157 67.5
BolC9t58038H Brassica oleracea HOM05D012305 ORTHO05D014046 4.6e-40 168.3 157 67.5
Sp6g21040 Schrenkiella parvula HOM05D012305 ORTHO05D014046 1.7e-39 166.4 159 68.6
A10p16570 Brassica napus HOM05D012305 ORTHO05D014046 2.3e-39 166.0 159 65.4
BraA10t43741Z Brassica rapa HOM05D012305 ORTHO05D014046 3.0e-39 165.6 161 65.2
BcaB08g36264 Brassica carinata HOM05D012305 ORTHO05D014046 2.8e-37 159.1 155 62.6
THA.LOC104799445 Tarenaya hassleriana HOM05D012305 ORTHO05D014046 1.8e-15 86.7 59 67.8
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 3.6e-08 62.4 76 44.7
THA.LOC104810784 Tarenaya hassleriana HOM05D012305 ORTHO05D014046 7.9e-08 61.2 95 43.2
Peaxi162Scf00832g00006 Petunia axillaris HOM05D030065 ORTHO05D005174 1.0e-07 60.8 78 46.2
Sopen11g025730 Solanum pennellii HOM05D030065 ORTHO05D005174 1.8e-07 60.1 79 48.1
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 2.3e-07 59.7 90 43.3
Solyc11g066000.1 Solanum lycopersicum HOM05D030065 ORTHO05D005174 2.3e-07 59.7 79 46.8
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 2.3e-07 59.7 70 44.3
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 6.7e-07 58.2 55 60.0
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 8.8e-07 57.8 55 50.9
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 8.8e-07 57.8 75 44.0
PGSC0003DMG400000470 Solanum tuberosum HOM05D030065 ORTHO05D005174 8.8e-07 57.8 78 42.3
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 1.1e-06 57.4 55 50.9
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.0e-06 56.6 70 42.9
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.5e-06 56.2 70 42.9
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 3.3e-06 55.8 76 42.1
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.3e-06 55.5 70 42.9
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 4.3e-06 55.5 94 39.4
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 5.7e-06 55.1 76 43.4
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 5.7e-06 55.1 70 44.3
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 7.4e-06 54.7 57 50.9


User provided reference genes

Program Settings