Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.8e-79 298.5 149 100.0
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.6e-74 281.6 152 93.4
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.1e-70 270.0 149 91.3
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.6e-69 266.2 153 88.2
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 4.5e-69 264.6 154 87.7
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 4.5e-69 264.6 154 87.7
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 7.7e-69 263.8 153 86.9
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.2e-66 256.5 150 88.0
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.4e-65 253.1 153 85.0
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.8e-65 252.7 151 84.1
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 2.6e-64 248.8 150 84.7
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 3.4e-64 248.4 151 85.4
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 3.4e-64 248.4 149 84.6
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 9.8e-64 246.9 151 84.8
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.8e-63 245.4 151 83.4
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.8e-62 242.7 152 84.9
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 3.1e-62 241.9 151 80.1
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 5.9e-61 237.7 156 81.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.0e-57 226.9 155 74.2
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.6e-56 222.2 165 75.2
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 4.1e-54 214.9 146 74.0
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 7.0e-54 214.2 150 70.7
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 7.8e-53 210.7 149 76.5
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 9.8e-48 193.7 136 70.6
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 4.9e-47 191.4 160 61.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 7.0e-46 187.6 157 60.5
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.7e-45 185.7 159 58.5
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 6.0e-45 184.5 159 59.1
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.8e-45 184.1 137 65.0
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.0e-44 183.7 163 60.1
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.3e-44 183.3 137 65.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 5.0e-44 181.4 156 64.1
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 5.0e-44 181.4 142 64.1
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 5.0e-44 181.4 159 58.5
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.6e-44 181.0 142 64.1
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 6.6e-44 181.0 159 58.5
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 9.5e-43 177.2 149 59.7
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.2e-42 176.8 153 60.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.8e-42 175.6 159 56.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 4.7e-42 174.9 142 62.7
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 6.2e-42 174.5 136 64.0
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.1e-41 173.7 117 69.2
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-41 172.9 156 59.6
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-41 172.9 156 59.6
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-41 172.9 156 59.6
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.8e-41 172.9 150 63.3
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 3.1e-41 172.2 122 68.0
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.1e-41 172.2 138 60.9
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 5.2e-41 171.4 151 59.6
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 6.8e-41 171.0 157 59.9
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.0e-40 169.5 158 55.1
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.6e-40 169.1 136 63.2
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.6e-40 169.1 117 68.4
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.4e-40 168.7 126 65.1
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 3.4e-40 168.7 122 69.7
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 7.5e-40 167.5 161 57.1
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.3e-39 166.8 150 58.0
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.3e-39 166.8 147 55.1
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.7e-39 166.4 157 58.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.7e-39 166.4 135 62.2
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.9e-39 164.9 137 59.9
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.9e-39 164.9 163 53.4
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 6.4e-39 164.5 146 57.5
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 6.4e-39 164.5 121 63.6
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.1e-38 163.7 140 58.6
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.4e-38 163.3 142 59.9
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.4e-38 163.3 141 58.2
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 4.1e-38 161.8 160 54.4
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.1e-38 161.8 139 61.2
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 5.4e-38 161.4 158 55.1
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 9.2e-38 160.6 150 55.3
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 9.2e-38 160.6 126 59.5
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.2e-37 160.2 85 80.0
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 138 58.7
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 2.1e-37 159.5 140 59.3
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.1e-37 159.5 137 59.1
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.7e-37 159.1 114 66.7
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 4.6e-37 158.3 156 55.1
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 4.6e-37 158.3 85 77.6
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 7.8e-37 157.5 152 54.6
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 7.8e-37 157.5 105 71.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.0e-36 157.1 101 72.3
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.0e-36 157.1 150 57.3
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.3e-36 156.8 92 76.1
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.3e-36 156.8 147 56.5
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.7e-36 156.4 87 74.7
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 2.3e-36 156.0 158 55.7
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 3.0e-36 155.6 84 81.0
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 3.0e-36 155.6 85 78.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.9e-36 155.2 151 55.6
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 3.9e-36 155.2 90 72.2
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 3.9e-36 155.2 146 57.5
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 5.1e-36 154.8 86 76.7
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 6.6e-36 154.5 153 54.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 8.6e-36 154.1 153 54.2
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.5e-35 153.3 130 57.7
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.5e-35 153.3 130 57.7
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.5e-35 153.3 155 56.1
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.5e-35 153.3 94 71.3
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.9e-35 152.9 85 75.3
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.9e-35 152.9 136 56.6
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 9.5e-35 150.6 133 60.2
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.6e-34 149.8 81 80.2
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.6e-34 149.8 79 83.5
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 3.6e-34 148.7 124 56.5
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 6.2e-34 147.9 148 53.4
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 8.1e-34 147.5 85 75.3
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.8e-33 146.4 130 55.4
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 5.2e-33 144.8 141 54.6
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 6.8e-33 144.4 84 73.8
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.2e-32 143.7 148 51.4
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.5e-32 143.3 77 80.5
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.5e-32 143.3 138 48.6
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.1e-30 137.1 114 62.3
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 4.6e-29 131.7 120 53.3
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 7.8e-29 131.0 135 53.3
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.9e-28 128.6 81 69.1
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.1e-25 120.6 105 61.9
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.4e-25 120.2 150 45.3
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.4e-25 119.4 156 42.9
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 3.1e-25 119.0 79 75.9
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.1e-25 119.0 111 54.1
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.2e-24 117.1 54 87.0
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.5e-24 116.7 75 69.3
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.2e-23 112.8 52 88.5
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.4e-22 110.2 112 54.5
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 4.2e-22 108.6 108 52.8
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 8.7e-20 100.9 82 52.4
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 3.3e-19 99.0 141 40.4
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.3e-19 99.0 94 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.1e-18 96.3 103 47.6
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.8e-17 93.2 102 45.1
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.2e-16 90.5 145 41.4
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 6.4e-15 84.7 43 81.4
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.6e-13 80.1 153 39.2
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.5e-11 73.6 98 37.8
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 6.2e-10 68.2 93 38.7
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 4.0e-09 65.5 44 61.4
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 6.9e-09 64.7 80 47.5
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 9.0e-09 64.3 43 62.8
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 2.9e-07 59.3 41 58.5
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.1e-06 57.4 49 51.0


User provided reference genes

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