Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.3e-120 435.6 229 100.0
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.2e-113 413.3 229 96.5
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.6e-108 395.6 226 86.7
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 9.9e-108 393.7 223 88.3
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 2.7e-105 385.6 226 85.4
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-104 382.9 226 83.6
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.0e-104 382.1 226 84.5
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-103 380.2 227 83.3
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.5e-103 379.8 227 82.8
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.6e-102 376.3 232 81.5
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-101 372.9 227 86.3
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.8e-101 372.9 227 84.6
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.4e-101 372.5 226 86.3
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.4e-101 372.5 226 86.3
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 4.0e-101 371.7 236 80.5
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.8e-96 356.3 226 80.5
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.5e-92 343.2 255 69.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.4e-90 336.7 226 73.9
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 3.0e-88 328.9 182 88.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.0e-84 316.2 222 75.2
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.2e-82 308.5 226 73.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.5e-79 300.1 222 71.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.3e-78 297.0 222 73.4
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 3.7e-78 295.4 225 62.2
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.8e-77 293.1 223 69.5
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.8e-77 293.1 223 66.4
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 4.1e-77 292.0 225 68.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.3e-77 291.6 217 73.3
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 9.1e-77 290.8 227 65.6
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 9.1e-77 290.8 256 58.6
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.0e-76 289.7 226 63.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.0e-76 289.7 218 64.7
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.5e-76 288.9 227 67.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.5e-76 288.5 227 70.5
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 5.9e-76 288.1 225 67.1
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.9e-76 288.1 230 64.3
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 7.7e-76 287.7 225 68.4
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 7.7e-76 287.7 227 65.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.0e-75 287.3 227 61.7
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.3e-75 287.0 225 68.0
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.3e-75 287.0 225 68.9
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.3e-75 287.0 223 70.4
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.7e-75 286.6 225 68.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.2e-75 286.2 228 61.8
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.9e-75 285.8 226 65.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 3.8e-75 285.4 225 64.4
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.0e-75 285.0 225 67.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.0e-75 285.0 223 65.5
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 8.5e-75 284.3 218 63.3
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.4e-74 283.5 226 68.6
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.4e-74 283.5 223 65.9
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.4e-74 283.5 224 61.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 3.2e-74 282.3 218 64.7
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 4.2e-74 282.0 225 66.2
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 9.4e-74 280.8 221 68.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.6e-73 280.0 230 66.5
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.6e-73 280.0 225 65.3
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 2.7e-73 279.3 225 64.4
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.7e-73 279.3 227 65.6
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.6e-73 278.9 223 63.2
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.1e-73 278.1 217 66.4
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 6.1e-73 278.1 230 66.1
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.0e-72 277.3 225 62.7
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-72 276.9 230 64.8
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.4e-72 276.9 226 65.9
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.3e-72 276.2 226 64.6
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 2.3e-72 276.2 223 62.8
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 3.0e-72 275.8 226 66.8
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.9e-72 275.4 229 65.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 3.9e-72 275.4 225 67.1
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 3.9e-72 275.4 227 58.1
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-71 273.5 220 60.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.0e-71 273.1 217 61.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.4e-71 271.9 226 65.0
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.7e-71 271.6 215 63.7
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 7.4e-71 271.2 246 63.0
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.7e-70 268.9 226 62.4
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.7e-70 268.9 226 61.5
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.7e-70 268.9 224 65.2
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.7e-70 268.9 224 62.9
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 6.3e-70 268.1 221 65.6
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 6.3e-70 268.1 226 58.0
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 8.2e-70 267.7 225 61.3
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 8.2e-70 267.7 226 65.9
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.1e-69 267.3 226 58.0
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.4e-69 266.2 226 65.5
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 3.1e-69 265.8 172 72.7
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.1e-69 265.8 222 60.8
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.1e-69 265.8 225 63.1
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 4.1e-69 265.4 230 64.3
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-69 265.4 222 61.3
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.1e-69 264.2 222 62.6
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 9.1e-69 264.2 248 59.7
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.2e-68 263.8 222 60.8
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.2e-68 263.8 225 64.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.6e-68 263.5 225 59.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 3.5e-68 262.3 231 63.2
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 3.5e-68 262.3 217 65.4
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 5.9e-68 261.5 225 60.9
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.3e-67 260.4 246 60.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.7e-67 260.0 226 61.1
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.9e-67 259.2 231 60.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 2.9e-67 259.2 222 63.5
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.1e-66 257.3 226 62.4
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.9e-66 256.5 226 61.5
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 3.2e-66 255.8 223 61.0
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 4.2e-66 255.4 223 61.9
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.7e-65 251.9 223 57.0
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 6.1e-65 251.5 158 73.4
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 8.0e-65 251.1 223 57.4
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.0e-65 251.1 223 57.4
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.0e-65 251.1 223 57.4
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.4e-64 250.4 207 61.8
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 8.8e-64 247.7 274 48.5
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.2e-63 247.3 221 62.9
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-63 245.0 223 56.5
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 7.5e-63 244.6 228 59.2
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 7.5e-63 244.6 233 54.5
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.8e-62 241.9 227 60.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.3e-62 241.5 218 54.6
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.8e-61 240.0 224 58.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.1e-61 239.2 268 51.9
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.1e-61 238.8 163 69.3
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 7.0e-61 238.0 240 53.3
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 5.9e-60 235.0 224 53.1
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 7.7e-60 234.6 255 50.6
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.0e-59 234.2 255 55.3
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.0e-59 234.2 237 55.7
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.7e-59 233.4 220 54.1
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.0e-59 231.9 192 65.1
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.1e-58 230.7 233 53.6
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.1e-53 214.2 143 67.1
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.4e-53 213.0 131 80.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.0e-52 209.9 140 69.3
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.6e-51 204.5 270 44.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 2.1e-49 199.9 130 70.8
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.7e-49 198.7 230 47.8
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.0e-48 197.6 140 66.4
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.9e-48 194.5 130 70.0
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 7.5e-47 191.4 171 56.1
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.6e-44 183.7 135 63.0
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 3.5e-44 182.6 135 60.7
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.1e-42 177.6 165 52.7
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.5e-42 176.4 130 61.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 5.2e-40 168.7 122 64.8
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 9.2e-37 157.9 134 54.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.8e-33 146.4 234 44.0
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.6e-31 139.8 129 57.4
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.7e-30 137.1 90 64.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 5.4e-29 132.1 91 63.7
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 7.6e-23 111.7 71 71.8
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.9e-21 107.1 116 50.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 5.4e-21 105.5 226 27.9
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.1e-20 103.6 79 67.1
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 3.5e-20 102.8 123 39.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.6e-20 102.4 101 66.3
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 4.7e-17 92.4 175 33.7
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.8e-16 90.5 102 41.2
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 4.0e-16 89.4 77 62.3
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 3.4e-15 86.3 134 31.3
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 9.9e-15 84.7 92 60.9
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 8.4e-14 81.6 117 35.0
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.1e-13 81.3 87 65.5
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.1e-13 81.3 98 59.2
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.4e-13 79.0 95 60.0
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 4.6e-12 75.9 73 53.4
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 3.9e-11 72.8 56 66.1
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 9.0e-08 61.6 54 59.3


User provided reference genes

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