Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 7.4e-98 360.5 181 100.0
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.3e-91 339.7 190 92.6
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 6.7e-91 337.4 181 94.5
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.0e-86 323.6 179 89.4
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.2e-86 322.4 191 84.3
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.2e-86 322.4 191 84.3
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 8.5e-86 320.5 191 83.8
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.9e-85 319.3 191 83.2
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.2e-85 318.5 179 88.8
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 4.6e-84 314.7 196 80.1
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.8e-83 312.8 197 79.7
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 7.7e-79 297.4 179 83.2
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.1e-69 266.9 176 79.0
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 3.3e-66 255.4 152 81.6
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 8.2e-65 250.8 151 80.1
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.1e-64 250.4 170 75.9
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.4e-64 250.0 153 77.8
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.1e-64 248.8 160 73.8
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 4.1e-64 248.4 167 73.7
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 4.1e-64 248.4 165 74.5
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.3e-64 248.1 151 78.8
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 5.3e-64 248.1 152 80.3
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 5.9e-63 244.6 150 77.3
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 7.7e-63 244.2 158 76.6
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.7e-62 243.0 151 75.5
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 2.9e-62 242.3 178 68.5
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 6.5e-62 241.1 170 71.2
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 8.5e-62 240.7 152 75.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.1e-61 240.4 177 68.9
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.9e-61 239.6 151 75.5
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.5e-61 239.2 186 66.7
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 3.2e-61 238.8 121 96.7
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 4.2e-61 238.4 171 70.2
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 7.2e-61 237.7 162 74.7
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 9.4e-61 237.3 176 69.3
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-60 236.9 171 69.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.1e-60 236.1 173 67.6
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 2.7e-60 235.7 200 63.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 4.7e-60 235.0 170 70.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.7e-60 235.0 153 72.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.3e-59 232.6 174 67.2
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 5.2e-59 231.5 159 69.8
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.7e-59 231.1 163 70.6
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 8.8e-59 230.7 163 72.4
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.6e-58 229.2 165 70.9
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 4.4e-58 228.4 166 70.5
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 5.7e-58 228.0 151 74.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.7e-57 226.5 171 66.1
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.8e-57 225.7 204 59.3
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.8e-57 225.7 181 64.1
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 3.7e-57 225.3 168 67.3
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 6.3e-57 224.6 155 69.7
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.1e-56 222.2 166 68.7
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 5.3e-56 221.5 151 70.9
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 5.3e-56 221.5 160 69.4
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 7.0e-56 221.1 149 74.5
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.7e-55 219.2 188 62.2
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.7e-54 216.5 177 64.4
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 3.8e-54 215.3 171 63.2
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 6.5e-54 214.5 150 70.0
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 2.5e-53 212.6 173 64.2
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 5.5e-53 211.5 200 57.5
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.6e-52 209.9 234 51.3
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 6.1e-52 208.0 190 60.0
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.3e-51 206.1 151 64.9
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.3e-51 206.1 150 68.0
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.3e-51 206.1 152 69.1
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.0e-51 205.3 151 68.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 6.8e-51 204.5 151 62.9
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.5e-50 203.4 166 63.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 2.0e-50 203.0 166 65.1
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.0e-50 203.0 153 66.7
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 2.8e-49 199.1 155 63.9
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 8.3e-49 197.6 157 61.8
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.8e-48 196.4 159 62.3
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.4e-48 196.1 151 66.9
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.4e-48 196.1 150 60.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 3.1e-48 195.7 162 58.0
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.1e-48 195.3 153 66.0
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.4e-48 194.9 173 57.2
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 9.1e-48 194.1 119 77.3
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.2e-47 193.7 119 79.8
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.0e-47 193.0 158 59.5
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 2.7e-47 192.6 154 61.7
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.7e-46 189.9 152 66.4
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 2.3e-46 189.5 112 81.2
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 8.6e-46 187.6 112 81.2
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.5e-45 186.8 108 83.3
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.5e-45 186.0 124 73.4
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.5e-45 186.0 152 64.5
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.3e-45 185.7 152 58.6
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 4.2e-45 185.3 159 55.3
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 5.5e-45 184.9 169 58.6
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 5.5e-45 184.9 109 81.7
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 9.5e-45 184.1 165 57.0
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.2e-44 183.7 152 60.5
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.8e-44 182.6 153 56.2
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 3.6e-44 182.2 148 60.8
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 4.7e-44 181.8 113 77.0
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 8.0e-44 181.0 112 78.6
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.8e-43 179.9 113 77.0
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 6.8e-43 177.9 112 76.8
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 8.9e-43 177.6 162 56.2
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 8.9e-43 177.6 118 76.3
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.5e-42 176.8 160 59.4
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 2.0e-42 176.4 119 71.4
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.6e-42 176.0 165 55.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 3.4e-42 175.6 158 54.4
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 5.7e-42 174.9 112 77.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 7.5e-42 174.5 134 68.7
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 7.5e-42 174.5 116 73.3
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 9.8e-42 174.1 112 75.0
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 9.8e-42 174.1 148 60.8
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.1e-40 170.6 150 59.3
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 9.2e-40 167.5 150 57.3
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 5.9e-39 164.9 144 56.9
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.7e-38 163.3 129 63.6
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 2.3e-38 162.9 136 58.1
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.5e-37 160.2 124 62.9
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.9e-37 159.8 177 52.5
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.3e-37 159.1 112 70.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 3.3e-37 159.1 148 55.4
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 5.6e-37 158.3 152 57.2
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.5e-34 150.2 129 58.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 8.3e-33 144.4 165 53.9
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 8.3e-33 144.4 132 61.4
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 7.0e-32 141.4 111 60.4
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.2e-31 140.6 158 52.5
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 7.8e-31 137.9 96 65.6
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.3e-30 136.3 77 83.1
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 3.9e-30 135.6 165 50.3
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.1e-24 117.5 69 78.3
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.1e-24 117.5 124 53.2
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 2.4e-24 116.3 119 52.9
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 4.1e-24 115.5 70 78.6
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.0e-24 114.8 158 43.7
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.3e-22 110.5 90 63.3
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-21 107.5 77 59.7
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.9e-21 106.7 70 72.9
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.8e-20 102.8 71 69.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.1e-19 100.9 157 40.1
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.3e-19 99.8 88 59.1
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.1e-19 99.4 148 43.2
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.9e-17 92.0 123 46.3
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 3.2e-16 89.4 118 46.6
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.6e-15 87.0 55 72.7
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.6e-12 77.0 55 69.1
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 6.2e-12 75.1 79 53.2
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 8.1e-12 74.7 43 79.1
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 4.4e-10 68.9 43 74.4
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.3e-09 67.4 45 64.4
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 8.4e-09 64.7 36 77.8
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.4e-08 63.9 39 76.9
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.9e-08 63.5 51 62.7
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.4e-08 63.2 47 55.3
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 4.2e-08 62.4 50 58.0
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 7.1e-08 61.6 37 70.3
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.6e-07 60.5 35 77.1
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.6e-07 60.5 86 43.0
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.1e-07 60.1 43 62.8
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 7.8e-07 58.2 54 53.7
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.7e-06 57.0 51 56.9
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 2.3e-06 56.6 35 71.4
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 3.9e-06 55.8 37 67.6
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 8.7e-06 54.7 43 62.8


User provided reference genes

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