Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 5.2e-105 384.4 197 100.0
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 5.9e-101 370.9 197 96.4
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 7.8e-101 370.5 197 95.9
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 2.3e-97 359.0 198 93.4
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 8.3e-95 350.5 197 91.9
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 2.7e-93 345.5 198 91.4
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 9.5e-91 337.0 196 89.3
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 2.1e-90 335.9 196 88.8
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.4e-89 333.2 196 88.8
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 4.0e-89 331.6 196 87.8
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 6.8e-89 330.9 194 88.1
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 1.5e-88 329.7 197 87.8
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 2.0e-88 329.3 194 88.7
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 2.0e-88 329.3 194 88.7
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 4.4e-88 328.2 194 87.6
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 8.3e-87 323.9 185 88.6
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 2.7e-85 318.9 194 85.6
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 8.6e-84 313.9 201 82.6
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.1e-83 313.5 188 85.1
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 4.6e-77 291.6 197 76.6
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 5.1e-68 261.5 194 67.5
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 6.6e-68 261.2 194 66.5
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.6e-66 256.5 198 66.2
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.6e-66 256.5 195 65.1
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 2.1e-66 256.1 195 64.6
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 2.8e-66 255.8 190 65.8
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 4.8e-66 255.0 193 64.8
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.4e-65 253.4 192 65.6
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.8e-65 253.1 196 65.3
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.4e-65 252.7 197 64.0
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 4.0e-65 251.9 192 65.6
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 4.0e-65 251.9 193 66.3
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 4.0e-65 251.9 193 65.8
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.0e-65 250.8 197 63.5
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 9.0e-65 250.8 189 64.0
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.5e-64 250.0 193 65.8
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.4e-64 248.4 197 63.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 4.4e-64 248.4 198 64.1
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.4e-64 248.4 198 62.6
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 4.4e-64 248.4 198 64.6
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 7.6e-64 247.7 197 63.5
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 9.9e-64 247.3 193 64.8
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 1.7e-63 246.5 193 63.2
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 3.8e-63 245.4 197 62.9
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 4.9e-63 245.0 195 62.6
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 4.9e-63 245.0 194 64.4
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 4.9e-63 245.0 199 63.8
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 8.4e-63 244.2 199 61.3
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 8.4e-63 244.2 190 65.8
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.1e-62 243.8 199 61.3
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.4e-62 242.7 199 63.8
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 9.3e-62 240.7 198 63.1
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.2e-61 240.4 191 63.9
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.6e-61 240.0 186 67.2
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 3.5e-61 238.8 189 61.9
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 6.0e-61 238.0 198 62.1
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 7.8e-61 237.7 198 60.6
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 1.3e-60 236.9 189 61.9
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.3e-60 236.9 198 63.6
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.3e-60 236.9 189 60.8
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.7e-60 236.5 194 62.4
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.7e-60 236.5 186 65.6
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 6.6e-60 234.6 196 60.2
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.5e-59 233.4 190 61.1
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.9e-59 233.0 197 61.4
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 3.3e-59 232.3 198 60.1
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 5.6e-59 231.5 186 60.2
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.6e-58 229.9 192 60.4
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.6e-58 229.9 205 59.5
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.6e-58 229.9 193 61.7
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 3.6e-58 228.8 188 59.0
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 6.2e-58 228.0 197 61.4
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 8.1e-58 227.6 197 61.4
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 8.1e-58 227.6 187 58.8
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.4e-57 226.9 240 52.5
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.4e-57 226.9 189 59.8
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 4.0e-57 225.3 214 53.7
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.5e-56 223.4 187 59.9
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 2.0e-56 223.0 197 59.4
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 7.6e-56 221.1 251 50.2
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.3e-55 220.3 193 58.5
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.7e-55 219.9 196 58.7
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 2.9e-55 219.2 275 45.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 1.9e-54 216.5 197 58.4
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.4e-54 216.1 163 65.6
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 7.1e-54 214.5 149 67.8
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.3e-52 210.3 194 57.2
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 3.0e-52 209.1 193 54.4
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 5.6e-51 204.9 194 52.6
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 6.2e-50 201.4 227 49.3
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.4e-49 199.5 195 57.4
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 4.0e-49 198.7 186 56.5
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 2.0e-48 196.4 142 66.9
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.0e-48 196.4 298 41.9
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 3.4e-48 195.7 146 67.8
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 7.1e-46 188.0 197 53.8
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 1.6e-45 186.8 187 54.5
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.6e-45 186.8 185 50.8
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.9e-44 182.2 331 37.5
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.6e-42 176.8 150 58.7
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.1e-42 176.4 152 59.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.4e-41 173.7 148 60.1
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 6.9e-41 171.4 197 47.2
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.6e-40 169.5 121 66.1
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 2.2e-39 166.4 195 47.7
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 6.5e-39 164.9 198 45.5
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.2e-37 160.6 146 54.1
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 8.7e-36 154.5 123 64.2
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 4.3e-35 152.1 194 46.9
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 9.7e-35 151.0 109 67.0
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.8e-33 146.7 189 43.4
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 3.1e-33 146.0 99 68.7
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 2.5e-27 126.3 94 61.7
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 3.7e-26 122.5 98 62.2
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.1e-25 120.9 100 57.0
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 1.7e-23 113.6 186 39.2
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 8.5e-23 111.3 121 50.4
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 7.2e-22 108.2 136 50.0
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.3e-18 97.4 150 36.7
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 4.8e-18 95.5 80 57.5
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 4.5e-16 89.0 75 60.0
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 4.5e-16 89.0 69 59.4
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.3e-15 87.4 199 33.7
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 6.5e-15 85.1 56 76.8
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.1e-14 84.3 54 77.8
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-14 84.3 54 77.8
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-13 80.9 89 48.3
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 4.7e-13 79.0 145 35.9
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 4.7e-13 79.0 90 45.6
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.0e-12 77.8 89 43.8
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 5.2e-12 75.5 57 63.2
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.2e-12 75.5 89 43.8
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.8e-10 69.7 70 55.7
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.8e-10 68.9 52 59.6
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 8.2e-10 68.2 57 61.4
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.6e-08 63.9 49 61.2
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.6e-08 63.2 86 45.3


User provided reference genes

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