Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 1.8e-199 699.1 378 100.0
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 1.2e-182 643.3 379 90.0
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 1.0e-170 603.6 379 85.2
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 1.2e-169 600.1 385 83.1
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 2.3e-165 585.9 374 82.6
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 2.4e-159 565.8 376 78.7
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 2.4e-159 565.8 376 78.7
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 1.0e-154 550.4 401 76.1
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 9.5e-148 527.3 420 71.2
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 3.6e-147 525.4 376 75.3
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 2.3e-146 522.7 374 75.7
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 1.5e-140 503.4 384 74.5
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 4.3e-140 501.9 378 74.6
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 4.7e-139 498.4 393 71.0
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 4.7e-139 498.4 389 72.2
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 3.9e-133 478.8 430 65.8
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 1.9e-116 423.3 361 63.2
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 2.3e-109 399.8 377 57.0
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 1.5e-105 387.1 369 55.6
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 2.6e-105 386.3 374 55.1
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 3.2e-103 379.4 374 53.7
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 4.6e-102 375.6 366 54.6
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.0e-101 374.4 390 52.6
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 3.0e-101 372.9 383 51.4
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 5.1e-101 372.1 380 52.9
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.3e-100 369.4 394 52.3
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 5.7e-100 368.6 369 53.7
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 9.6e-100 367.9 365 52.1
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.3e-99 367.5 399 51.6
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 8.2e-99 364.8 378 53.2
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.1e-98 364.4 369 52.8
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 1.4e-98 364.0 369 52.3
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 6.9e-98 361.7 364 53.0
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 1.2e-97 360.9 371 52.0
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 1.9e-95 353.6 359 52.4
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 7.2e-95 351.7 363 53.2
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 7.2e-95 351.7 371 52.6
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 2.7e-94 349.7 370 50.8
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 5.1e-93 345.5 368 52.2
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 6.7e-93 345.1 363 52.1
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 6.7e-93 345.1 362 52.5
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 3.3e-92 342.8 374 49.7
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 4.3e-92 342.4 384 49.0
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 1.3e-91 340.9 358 50.3
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 2.8e-91 339.7 367 49.3
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 3.7e-91 339.3 367 51.5
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 6.3e-91 338.6 383 48.8
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 8.2e-91 338.2 367 48.8
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 2.4e-90 336.7 363 51.5
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 5.3e-90 335.5 384 49.0
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 9.1e-90 334.7 363 48.8
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 2.0e-89 333.6 376 48.9
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 2.6e-89 333.2 360 52.2
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 8.5e-88 328.2 366 49.2
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 2.5e-87 326.6 366 51.4
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 4.2e-87 325.9 457 42.5
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 2.1e-86 323.6 375 46.1
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 6.1e-86 322.0 398 44.5
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 1.8e-85 320.5 377 46.4
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 3.0e-85 319.7 371 48.8
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 5.1e-85 318.9 344 52.6
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 4.4e-84 315.8 333 50.2
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 1.4e-82 310.8 403 45.4
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 4.5e-81 305.8 418 42.3
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 1.3e-80 304.3 376 45.2
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.8e-80 302.8 367 48.5
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 2.5e-79 300.1 380 46.1
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 3.2e-79 299.7 349 48.1
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 1.4e-77 294.3 425 42.1
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 2.3e-77 293.5 397 43.6
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 3.0e-77 293.1 419 41.5
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 8.8e-77 291.6 402 43.5
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 1.7e-75 287.3 310 52.3
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 6.3e-75 285.4 391 43.5
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 3.5e-73 279.6 316 45.9
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 7.2e-71 271.9 360 42.5
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 9.7e-68 261.5 286 47.9
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 3.7e-67 259.6 343 42.6
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 3.7e-67 259.6 287 49.8
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 7.0e-66 255.4 316 42.4
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 3.8e-64 249.6 362 39.8
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 7.2e-63 245.4 316 43.7
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 7.2e-63 245.4 411 36.7
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 1.2e-62 244.6 364 41.5
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 2.1e-62 243.8 385 39.5
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.3e-59 234.6 309 47.6
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.3e-59 234.6 309 47.6
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 1.8e-58 230.7 346 40.8
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 2.7e-57 226.9 173 61.8
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 1.9e-55 220.7 360 37.2
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 5.5e-55 219.2 360 37.2
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 5.2e-53 212.6 283 44.5
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 5.7e-52 209.1 371 36.9
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 2.0e-49 200.7 423 34.3
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 2.3e-48 197.2 177 51.4
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 8.0e-46 188.7 160 53.8
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 5.4e-42 176.0 353 34.8
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 1.6e-41 174.5 144 55.6
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 3.1e-29 133.7 289 34.6
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 4.6e-25 119.8 169 45.0
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 2.5e-23 114.0 182 41.2
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 4.7e-22 109.8 82 62.2
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 4.7e-22 109.8 82 62.2
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.4e-18 98.2 136 41.9
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.0e-16 92.0 154 37.7
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 1.7e-16 91.3 362 23.2
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 8.7e-16 89.0 148 40.5
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 3.1e-13 80.5 135 40.0
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 1.2e-09 68.6 58 51.7
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 9.6e-07 58.9 139 34.5


User provided reference genes

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