Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.0e-215 753.1 359 100.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 3.0e-199 698.4 348 94.5
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 4.3e-190 667.9 349 90.8
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 7.1e-185 650.6 327 93.0
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 3.0e-183 645.2 328 91.5
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 7.1e-177 624.0 321 90.7
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 1.6e-176 622.9 325 89.8
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.7e-176 622.1 321 90.7
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 8.7e-175 617.1 325 89.2
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 7.9e-160 567.4 321 82.6
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 2.8e-157 558.9 309 83.8
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.1e-152 542.7 309 79.6
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 2.7e-152 542.3 309 80.6
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 5.1e-151 538.1 315 78.4
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 6.7e-151 537.7 309 79.9
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.9e-150 536.2 309 79.9
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 7.4e-150 534.3 325 75.4
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.2e-149 532.7 309 79.0
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 2.8e-149 532.3 311 77.8
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.1e-148 530.4 309 79.0
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 3.1e-148 528.9 319 76.5
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 4.1e-148 528.5 304 79.6
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 4.1e-148 528.5 309 77.3
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 4.5e-147 525.0 309 78.6
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 5.9e-147 524.6 309 79.0
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 7.7e-147 524.2 322 77.0
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 7.7e-147 524.2 330 73.9
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 5.0e-146 521.5 309 76.1
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 5.0e-146 521.5 309 77.3
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 5.0e-146 521.5 326 73.0
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 5.0e-146 521.5 312 76.0
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 5.0e-146 521.5 309 77.0
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 6.5e-146 521.2 308 78.2
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 1.1e-145 520.4 321 73.8
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.4e-145 520.0 328 74.1
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.4e-145 520.0 312 76.0
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.4e-145 520.0 309 76.4
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 1.9e-145 519.6 322 76.4
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 1.9e-145 519.6 309 77.0
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 4.2e-145 518.5 309 77.3
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.5e-145 518.1 307 75.9
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 5.5e-145 518.1 309 75.7
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 7.2e-145 517.7 309 76.1
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 7.2e-145 517.7 308 76.9
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 9.4e-145 517.3 320 74.4
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.2e-144 516.9 304 78.6
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.1e-144 516.2 309 75.4
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.7e-144 515.8 307 76.5
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 3.6e-144 515.4 304 77.6
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 3.6e-144 515.4 309 76.4
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.6e-144 515.4 304 78.3
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 6.1e-144 514.6 317 75.1
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 6.1e-144 514.6 309 73.8
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 7.9e-144 514.2 309 76.1
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 7.9e-144 514.2 308 76.0
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.0e-143 513.8 311 74.6
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 1.4e-143 513.5 310 75.8
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.3e-143 512.7 310 77.4
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.3e-143 512.7 310 77.4
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 3.9e-143 511.9 304 78.9
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 6.7e-143 511.1 309 74.4
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 8.8e-143 510.8 309 77.0
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.1e-142 510.4 309 76.4
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.5e-142 510.0 315 73.7
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.5e-142 510.0 309 75.7
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 2.0e-142 509.6 309 75.4
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.3e-142 508.8 309 75.4
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 3.3e-142 508.8 318 73.6
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 4.3e-142 508.4 311 76.5
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.7e-142 508.1 307 76.2
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.4e-142 507.7 309 75.1
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 9.7e-142 507.3 309 75.4
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 9.7e-142 507.3 309 75.4
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.7e-141 506.5 310 74.5
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 4.8e-141 505.0 307 75.9
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 6.3e-141 504.6 306 74.8
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 8.2e-141 504.2 309 73.5
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 1.1e-140 503.8 310 75.5
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.8e-140 503.1 341 69.2
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 2.4e-140 502.7 309 74.4
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 2.4e-140 502.7 303 76.9
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 3.1e-140 502.3 309 74.8
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.1e-140 502.3 307 74.3
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 5.3e-140 501.5 310 74.2
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 5.3e-140 501.5 310 74.5
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 6.9e-140 501.1 314 72.0
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 6.9e-140 501.1 302 74.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 9.1e-140 500.7 310 74.8
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.0e-139 499.6 309 74.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.0e-139 499.6 310 74.8
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 3.4e-139 498.8 309 73.8
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.5e-139 498.4 309 73.8
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.4e-137 493.4 304 74.0
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 4.2e-137 491.9 310 73.5
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.4e-135 486.9 305 75.7
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 1.8e-135 486.5 320 72.5
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.9e-135 485.3 310 72.3
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 4.4e-134 481.9 309 73.5
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.2e-133 479.6 311 71.7
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 3.7e-133 478.8 321 68.2
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 1.0e-130 470.7 304 74.0
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 7.7e-123 444.5 308 69.2
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 8.5e-122 441.0 314 64.0
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 3.2e-121 439.1 309 68.6
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.7e-120 436.0 310 67.1
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.0e-119 434.1 310 68.7
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 2.6e-118 429.5 279 69.2
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 4.4e-118 428.7 321 62.0
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 4.4e-118 428.7 297 65.7
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 4.8e-117 425.2 325 66.2
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.7e-115 419.5 340 61.5
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.7e-115 419.5 340 61.5
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.2e-114 416.4 317 57.4
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 2.9e-114 416.0 317 65.6
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 2.5e-113 412.9 305 61.6
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 5.5e-113 411.8 207 91.8
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 4.7e-112 408.7 319 57.7
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 4.7e-112 408.7 231 79.7
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 9.1e-108 394.4 331 55.9
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-106 390.2 438 48.6
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 1.2e-96 357.5 209 78.5
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 3.6e-96 355.9 251 67.3
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 5.4e-92 342.0 210 74.8
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.9e-90 335.9 215 72.1
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.1e-79 301.2 165 81.8
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 4.0e-79 299.3 176 76.1
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.9e-76 290.4 323 44.6
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 1.2e-75 287.7 182 70.9
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.3e-66 256.9 304 49.0
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.7e-48 196.4 208 46.2
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.4e-39 167.9 114 67.5
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 8.4e-37 158.7 87 80.5
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.1e-35 154.1 99 70.7
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.7e-32 143.3 94 68.1
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 7.2e-28 129.0 80 76.2
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 4.6e-27 126.3 85 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 8.8e-26 122.1 309 28.5
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-24 117.9 69 75.4
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-23 115.2 91 61.5
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 2.0e-22 110.9 314 29.6
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 3.7e-16 90.1 62 69.4
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 8.5e-13 79.0 181 29.3
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 8.0e-11 72.4 87 41.4
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.4e-09 66.6 56 64.3
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.4e-07 61.6 48 58.3
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.8e-07 61.2 136 30.9


User provided reference genes

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