Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.6e-71 271.9 137 100.0
BcaC04g19944 Brassica carinata HOM05D015339 ORTHO05D003858 6.5e-30 134.4 134 53.0
BolC9t57805H Brassica oleracea HOM05D015339 ORTHO05D003858 6.5e-30 134.4 134 53.0
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 3.2e-29 132.1 134 52.2
A10p15050 Brassica napus HOM05D015339 ORTHO05D003858 4.2e-29 131.7 134 53.0
BraA10t43587Z Brassica rapa HOM05D015339 ORTHO05D003858 2.7e-28 129.0 134 52.2
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.3e-26 122.1 157 46.5
Thhalv10014953m.g Eutrema salsugineum HOM05D015339 ORTHO05D003858 9.7e-26 120.6 141 48.9
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 3.1e-24 115.5 129 51.2
Carub.0008s1815 Capsella rubella HOM05D003879 ORTHO05D003858 3.1e-24 115.5 149 45.6
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.4e-16 90.1 117 47.9
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 7.0e-16 87.8 93 50.5
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 3.8e-14 82.0 94 50.0
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 6.5e-14 81.3 80 51.2
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 8.5e-14 80.9 84 50.0
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 1.1e-13 80.5 112 47.3
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 1.1e-13 80.5 112 47.3
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.1e-13 80.5 104 44.2
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.9e-13 79.7 98 46.9
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 4.2e-13 78.6 72 52.8
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 5.5e-13 78.2 112 41.1
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 7.2e-13 77.8 73 52.1
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 7.2e-13 77.8 107 45.8
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 9.4e-13 77.4 81 46.9
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 9.4e-13 77.4 109 43.1
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 9.4e-13 77.4 113 46.9
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 1.2e-12 77.0 91 44.0
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.2e-12 77.0 105 43.8
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 2.1e-12 76.3 130 40.8
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 2.7e-12 75.9 106 47.2
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 2.7e-12 75.9 122 42.6
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 2.7e-12 75.9 122 42.6
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 2.7e-12 75.9 74 50.0
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.7e-12 75.9 93 45.2
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 4.7e-12 75.1 89 41.6
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 6.1e-12 74.7 107 43.0
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 6.1e-12 74.7 80 47.5
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 8.0e-12 74.3 77 48.1
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 8.0e-12 74.3 91 42.9
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 8.0e-12 74.3 108 39.8
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 1.0e-11 73.9 119 39.5
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.4e-11 73.6 80 46.2
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.4e-11 73.6 76 50.0
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 1.8e-11 73.2 98 42.9
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 1.8e-11 73.2 80 46.2
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.8e-11 73.2 80 46.2
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 1.8e-11 73.2 76 51.3
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 2.3e-11 72.8 85 43.5
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 2.3e-11 72.8 91 46.2
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 2.3e-11 72.8 65 56.9
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 3.0e-11 72.4 97 46.4
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 4.0e-11 72.0 76 50.0
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 4.0e-11 72.0 92 47.8
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 4.0e-11 72.0 81 45.7
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 4.0e-11 72.0 104 42.3
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 5.2e-11 71.6 134 38.8
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 5.2e-11 71.6 134 38.8
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 5.2e-11 71.6 127 40.9
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 5.2e-11 71.6 134 38.8
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 5.2e-11 71.6 68 48.5
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 5.2e-11 71.6 95 43.2
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 5.2e-11 71.6 83 43.4
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 6.8e-11 71.2 85 47.1
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 6.8e-11 71.2 73 49.3
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 6.8e-11 71.2 131 36.6
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 8.8e-11 70.9 110 40.0
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 8.8e-11 70.9 72 48.6
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 8.8e-11 70.9 78 50.0
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 8.8e-11 70.9 72 48.6
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 8.8e-11 70.9 130 36.2
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 1.2e-10 70.5 106 39.6
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.2e-10 70.5 68 50.0
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.5e-10 70.1 92 44.6
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 2.0e-10 69.7 104 40.4
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 2.0e-10 69.7 116 36.2
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 2.0e-10 69.7 109 40.4
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 3.4e-10 68.9 89 44.9
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 3.4e-10 68.9 118 38.1
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 3.4e-10 68.9 106 39.6
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 3.4e-10 68.9 111 39.6
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 3.4e-10 68.9 107 39.3
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 4.4e-10 68.6 100 41.0
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 4.4e-10 68.6 82 45.1
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 4.4e-10 68.6 76 46.1
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 4.4e-10 68.6 78 46.2
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 4.4e-10 68.6 92 40.2
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 7.5e-10 67.8 94 41.5
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 7.5e-10 67.8 70 47.1
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 7.5e-10 67.8 78 46.2
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 9.8e-10 67.4 113 36.3
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 9.8e-10 67.4 123 35.0
Thhalv10005267m.g Eutrema salsugineum HOM05D020304 ORTHO05D021442 9.8e-10 67.4 123 35.0
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 9.8e-10 67.4 140 36.4
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.3e-09 67.0 75 44.0
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 1.3e-09 67.0 95 43.2
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 1.3e-09 67.0 70 45.7
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 1.7e-09 66.6 110 37.3
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.7e-09 66.6 76 46.1
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 1.7e-09 66.6 68 48.5
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 1.7e-09 66.6 81 40.7
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-09 66.2 88 42.0
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 2.2e-09 66.2 70 47.1
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 2.2e-09 66.2 93 40.9
Thhalv10009583m.g Eutrema salsugineum HOM05D015339 ORTHO05D003858 2.2e-09 66.2 63 47.6
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 2.2e-09 66.2 114 38.6
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.2e-09 66.2 84 38.1
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 2.2e-09 66.2 102 39.2
AL5G12880 Arabidopsis lyrata HOM05D020304 ORTHO05D021442 2.8e-09 65.9 116 39.7
AT2G03230 Arabidopsis thaliana HOM05D020304 ORTHO05D021442 3.7e-09 65.5 115 38.3
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 6.3e-09 64.7 77 42.9
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 6.3e-09 64.7 72 43.1
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 6.3e-09 64.7 71 46.5
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 8.3e-09 64.3 83 41.0
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 1.1e-08 63.9 128 36.7
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.1e-08 63.9 68 45.6
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.1e-08 63.9 74 44.6
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-08 63.2 76 43.4
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-08 63.2 76 43.4
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-08 63.2 76 43.4
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-08 63.2 76 43.4
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 1.8e-08 63.2 89 41.6
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.8e-08 63.2 70 47.1
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.8e-08 63.2 108 36.1
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.8e-08 63.2 72 43.1
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.8e-08 63.2 68 47.1
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.4e-08 62.8 65 44.6
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.4e-08 62.8 97 40.2
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 3.1e-08 62.4 112 37.5
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 3.1e-08 62.4 63 50.8
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 5.4e-08 61.6 63 49.2
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 5.4e-08 61.6 69 44.9
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 5.4e-08 61.6 69 44.9
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 5.4e-08 61.6 70 44.3
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 7.0e-08 61.2 111 37.8
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 7.0e-08 61.2 67 40.3
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 9.1e-08 60.8 66 42.4
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 9.1e-08 60.8 95 38.9
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.2e-07 60.5 111 37.8
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.2e-07 60.5 79 40.5
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.0e-07 59.7 82 39.0
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.7e-07 59.3 63 44.4
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 4.5e-07 58.5 98 36.7
CARHR145560 Cardamine hirsuta HOM05D020304 ORTHO05D021442 5.9e-07 58.2 82 39.0
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 5.9e-07 58.2 105 36.2
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 5.9e-07 58.2 112 36.6
Carub.0005s0215 Capsella rubella HOM05D020304 ORTHO05D021442 7.7e-07 57.8 78 42.3
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 7.7e-07 57.8 63 46.0
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 1.0e-06 57.4 71 45.1
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 1.0e-06 57.4 77 39.0
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.0e-06 57.4 77 39.0
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.0e-06 57.4 77 39.0
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 1.0e-06 57.4 60 48.3
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 1.3e-06 57.0 117 33.3
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.3e-06 57.0 72 36.1
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 1.3e-06 57.0 119 34.5
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 1.7e-06 56.6 72 44.4
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 1.7e-06 56.6 60 46.7
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 1.7e-06 56.6 72 41.7
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 2.9e-06 55.8 58 48.3
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 2.9e-06 55.8 110 33.6
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 3.8e-06 55.5 101 39.6
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 3.8e-06 55.5 58 48.3
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 5.0e-06 55.1 75 36.0
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 6.6e-06 54.7 61 45.9
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 8.6e-06 54.3 58 48.3


User provided reference genes

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