Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 4.1e-66 254.6 131 100.0
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.6e-60 235.3 131 93.9
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.6e-60 235.3 131 93.9
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 4.6e-57 224.6 132 90.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 7.8e-57 223.8 132 90.2
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-54 216.5 132 88.6
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.1e-53 213.4 131 85.5
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.6e-52 208.8 132 87.1
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.4e-52 208.4 133 84.2
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.3e-51 206.5 132 86.4
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.9e-51 205.3 130 86.9
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 4.1e-50 201.4 132 84.1
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 4.1e-50 201.4 132 84.1
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 6.6e-48 194.1 131 81.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 9.9e-44 180.3 138 74.6
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.7e-43 179.5 133 76.7
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.4e-36 155.2 123 73.2
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 8.1e-30 134.0 92 81.5
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 8.1e-30 134.0 92 81.5
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 4.9e-27 124.8 124 60.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 8.4e-27 124.0 126 57.1
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.5e-26 121.3 124 58.9
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-25 120.2 127 55.9
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.6e-25 119.8 126 58.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 4.6e-25 118.2 123 57.7
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 7.9e-25 117.5 123 57.7
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.3e-24 116.7 124 56.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 3.0e-24 115.5 126 54.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.9e-24 115.2 118 55.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 5.1e-24 114.8 119 58.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 8.7e-24 114.0 124 55.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 2.5e-23 112.5 119 55.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.3e-23 112.1 127 55.1
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.3e-23 112.1 123 55.3
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.3e-23 112.1 134 53.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.6e-23 111.3 123 55.3
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.6e-23 110.5 123 55.3
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 9.6e-23 110.5 137 51.1
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-22 110.2 123 54.5
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-22 110.2 123 54.5
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.6e-22 109.8 119 52.1
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.8e-22 109.0 131 54.2
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.8e-22 108.2 127 55.1
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 6.2e-22 107.8 129 53.5
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.2e-22 107.8 128 53.1
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.1e-21 107.1 131 54.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.4e-21 106.7 134 50.7
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.8e-21 106.3 122 47.5
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.8e-21 106.3 118 52.5
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.8e-21 106.3 131 48.1
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 3.1e-21 105.5 126 53.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.1e-21 105.5 128 52.3
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.1e-21 105.5 115 51.3
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.0e-21 105.1 130 49.2
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.0e-21 105.1 126 54.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 5.3e-21 104.8 117 51.3
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.0e-20 102.8 126 54.8
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.6e-20 102.4 129 48.1
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 5.8e-20 101.3 128 49.2
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.6e-20 100.9 123 52.0
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 7.6e-20 100.9 126 45.2
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.0e-19 100.5 111 48.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.0e-19 100.5 118 50.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 3.8e-19 98.6 124 50.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.9e-19 98.2 123 46.3
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.5e-19 97.8 125 50.4
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.5e-19 97.8 127 50.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.1e-18 97.1 129 46.5
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.4e-18 96.7 114 50.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.9e-18 96.3 125 50.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.9e-18 96.3 128 48.4
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 2.5e-18 95.9 116 51.7
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 3.2e-18 95.5 125 49.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.2e-18 95.5 117 50.4
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.2e-18 95.5 117 50.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.2e-18 95.1 125 49.6
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.2e-18 95.1 125 49.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.2e-17 93.6 119 48.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.7e-17 92.4 123 49.6
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 2.7e-17 92.4 129 51.2
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 4.6e-17 91.7 118 50.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.6e-17 91.7 117 46.2
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 6.0e-17 91.3 114 49.1
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.3e-16 90.1 125 47.2
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.8e-16 89.7 126 48.4
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.3e-16 89.4 122 44.3
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.1e-16 88.2 130 47.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.1e-16 88.2 98 57.1
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 5.1e-16 88.2 118 46.6
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 6.7e-16 87.8 119 45.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 8.7e-16 87.4 132 47.7
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 8.7e-16 87.4 132 41.7
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 8.7e-16 87.4 98 53.1
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.1e-15 87.0 129 47.3
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.1e-15 87.0 121 49.6
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 123 45.5
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 123 45.5
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 123 44.7
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.5e-15 85.9 114 45.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 3.3e-15 85.5 134 43.3
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.3e-15 85.5 123 44.7
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.3e-15 85.1 124 43.5
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.3e-15 85.1 123 43.9
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 7.4e-15 84.3 115 46.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.4e-15 84.3 97 54.6
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 7.4e-15 84.3 123 44.7
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 9.6e-15 84.0 114 45.6
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.6e-14 83.2 114 45.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.8e-14 82.4 112 44.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.2e-14 80.9 117 40.2
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 8.2e-14 80.9 126 46.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 132 40.2
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.1e-13 80.5 137 44.5
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-13 79.7 110 46.4
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 4.1e-13 78.6 118 44.9
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 4.1e-13 78.6 118 44.9
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 4.1e-13 78.6 122 39.3
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 4.1e-13 78.6 129 49.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 6.9e-13 77.8 119 43.7
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.9e-13 77.8 109 42.2
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.9e-13 77.8 122 40.2
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 6.9e-13 77.8 138 39.1
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 6.9e-13 77.8 119 40.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 9.0e-13 77.4 124 38.7
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 9.0e-13 77.4 111 45.9
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 155 37.4
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-12 76.6 121 44.6
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.5e-12 76.6 122 39.3
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.0e-12 76.3 139 40.3
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.0e-12 76.3 121 39.7
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.0e-12 76.3 113 44.2
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.6e-12 75.9 115 43.5
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.6e-12 75.9 122 38.5
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 5.9e-12 74.7 112 44.6
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.3e-11 73.6 119 37.8
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.2e-11 72.8 119 39.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 2.9e-11 72.4 149 38.3
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 6.5e-11 71.2 129 38.0
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.5e-10 69.3 71 52.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 5.5e-10 68.2 124 42.7
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 7.2e-10 67.8 126 39.7
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 9.3e-10 67.4 121 38.8
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.2e-09 67.0 119 37.8
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.9e-09 64.3 101 41.6
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 7.9e-09 64.3 100 44.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.0e-08 63.9 130 40.0
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.3e-08 63.5 136 34.6
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.3e-08 62.8 125 36.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.0e-08 62.4 160 33.8
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.1e-07 60.5 93 41.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.9e-07 59.7 166 32.5
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.5e-07 59.3 110 40.9
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.3e-07 58.9 142 35.2
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 5.7e-07 58.2 113 38.9
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.4e-07 57.8 84 42.9


User provided reference genes

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