Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57345 Arabidopsis thaliana HOM05D007139 ORTHO05D009171 2.0e-74 282.7 189 100.0
AL8G33320 Arabidopsis lyrata HOM05D007139 ORTHO05D009171 1.0e-70 270.4 189 96.3
CARHR271140 Cardamine hirsuta HOM05D007139 ORTHO05D009171 2.9e-68 262.3 189 93.1
BcaB05g22339 Brassica carinata HOM05D007139 ORTHO05D009171 4.3e-64 248.4 189 90.5
Carub.0008s1786 Capsella rubella HOM05D007139 ORTHO05D009171 2.8e-63 245.7 190 79.5
Thhalv10014766m.g Eutrema salsugineum HOM05D007139 ORTHO05D009171 1.1e-62 243.8 190 84.7
BcaC03g14161 Brassica carinata HOM05D007139 ORTHO05D009171 2.1e-58 229.6 190 87.9
A02p08570 Brassica napus HOM05D007139 ORTHO05D009171 4.6e-58 228.4 191 78.5
BraA02t05926Z Brassica rapa HOM05D007139 ORTHO05D009171 4.6e-58 228.4 191 78.5
Aa31LG3G13220 Aethionema arabicum HOM05D007139 ORTHO05D009171 1.2e-45 187.2 191 78.5
Sp6g19070 Schrenkiella parvula HOM05D007139 ORTHO05D009171 3.6e-39 165.6 195 67.7
THA.LOC104813514 Tarenaya hassleriana HOM05D007139 ORTHO05D009171 4.7e-39 165.2 186 56.5
QL11p005114 Quercus lobata HOM05D007139 ORTHO05D009171 1.9e-35 153.3 188 64.9
TWI63G0338 Tripterygium wilfordii HOM05D007139 ORTHO05D009171 7.8e-34 147.9 185 63.8
Gohir.A08G019100 Gossypium hirsutum HOM05D007139 ORTHO05D009171 5.1e-33 145.2 186 60.8
Gorai.004G027200 Gossypium raimondii HOM05D007139 ORTHO05D009171 1.5e-32 143.7 186 61.8
Cpa.g.c34934.2 Carica papaya HOM05D007139 ORTHO05D009171 2.5e-32 142.9 186 64.0
Gohir.D08G029700 Gossypium hirsutum HOM05D007139 ORTHO05D009171 2.5e-32 142.9 186 61.8
FAN12G3123 Fragaria x ananassa HOM05D007139 ORTHO05D009171 5.6e-32 141.7 190 49.5
Atru.chr7.836 Acer truncatum HOM05D007139 ORTHO05D009171 7.3e-32 141.4 123 64.2
FvH4_4g07780 Fragaria vesca HOM05D007139 ORTHO05D009171 1.6e-31 140.2 190 48.9
Lalb_Chr12g0199481 Lupinus albus HOM05D007139 ORTHO05D009171 1.6e-31 140.2 184 62.0
FAN07G2196 Fragaria x ananassa HOM05D007139 ORTHO05D009171 3.6e-31 139.0 190 58.4
Glyma.13G098100 Glycine max HOM05D007139 ORTHO05D009171 3.6e-31 139.0 189 60.3
RcHm_v2.0_Chr4g0400871 Rosa chinensis HOM05D007139 ORTHO05D009171 4.8e-31 138.7 195 50.3
Dinv19561 Davidia involucrata HOM05D007139 ORTHO05D009171 8.1e-31 137.9 186 68.8
FAN22G0146 Fragaria x ananassa HOM05D007139 ORTHO05D009171 1.4e-30 137.1 190 50.5
Cfa013405 Carpinus fangiana HOM05D007139 ORTHO05D009171 6.9e-30 134.8 187 66.8
Hma1.2p1_1086F.1_g255460 Hydrangea macrophylla HOM05D007139 ORTHO05D009171 9.0e-30 134.4 187 64.7
CiPaw.08G034800 Carya illinoinensis HOM05D007139 ORTHO05D009171 1.2e-29 134.0 186 60.2
Lj4g0008370 Lotus japonicus HOM05D007139 ORTHO05D009171 7.6e-29 131.3 129 62.8
PGR044G0070 Punica granatum HOM05D007139 ORTHO05D009171 9.9e-29 131.0 190 62.1
Nn8g40530 Nelumbo nucifera HOM05D007139 ORTHO05D009171 1.7e-28 130.2 124 62.9
AUR62033234 Chenopodium quinoa HOM05D007139 ORTHO05D009171 2.2e-28 129.8 188 46.8
Sabra06G0127600 Salix brachista HOM05D007139 ORTHO05D009171 2.9e-28 129.4 200 45.0
FAN17G0841 Fragaria x ananassa HOM05D007139 ORTHO05D009171 3.8e-28 129.0 190 53.7
AUR62021317 Chenopodium quinoa HOM05D007139 ORTHO05D009171 8.4e-28 127.9 188 46.8
GSVIVG01029235001 Vitis vinifera HOM05D007139 ORTHO05D009171 8.4e-28 127.9 125 61.6
Glyma.17G061600 Glycine max HOM05D007139 ORTHO05D009171 1.1e-27 127.5 180 61.1
Potri.006G165800 Populus trichocarpa HOM05D007139 ORTHO05D009171 1.9e-27 126.7 190 46.8
MELO3C004003.2 Cucumis melo HOM05D007139 ORTHO05D009171 1.6e-26 123.6 127 57.5
MD13G1247100 Malus domestica HOM05D007139 ORTHO05D009171 2.1e-26 123.2 126 61.9
ClCG11G011980 Citrullus lanatus HOM05D007139 ORTHO05D009171 3.5e-26 122.5 129 56.6
Phvul.003G143600 Phaseolus vulgaris HOM05D007139 ORTHO05D009171 4.6e-26 122.1 190 58.4
Aqoxy7G02982 Aquilegia oxysepala HOM05D007139 ORTHO05D009171 1.8e-25 120.2 185 58.9
TAR383G0430 Trochodendron aralioides HOM05D007139 ORTHO05D009171 1.8e-25 120.2 126 60.3
VMungo1215G0446 Vigna mungo HOM05D007139 ORTHO05D009171 3.9e-25 119.0 189 57.1
Gorai.009G004000 Gossypium raimondii HOM05D007139 ORTHO05D009171 8.7e-25 117.9 169 60.9
Hund09039 Selenicereus undatus HOM05D007139 ORTHO05D009171 8.7e-25 117.9 186 60.8
SGA_v2.0_scaffold66G22428 Striga asiatica HOM05D007139 ORTHO05D009171 8.7e-25 117.9 185 57.8
Cc06_g13070 Coffea canephora HOM05D007139 ORTHO05D009171 1.5e-24 117.1 124 59.7
Actinidia02506 Actinidia chinensis HOM05D007139 ORTHO05D009171 2.5e-24 116.3 186 51.6
ECA234G0508 Erigeron canadensis HOM05D007139 ORTHO05D009171 5.6e-24 115.2 194 53.1
Lsat_1_v5_gn_5_85520 Lactuca sativa HOM05D007139 ORTHO05D009171 5.6e-24 115.2 194 56.2
Peaxi162Scf01054g00025 Petunia axillaris HOM05D007139 ORTHO05D009171 5.6e-24 115.2 189 45.5
MBI14_g08139_MAGBIO Magnolia biondii HOM05D007139 ORTHO05D009171 7.4e-24 114.8 127 55.9
Rhsim01G0002000 Rhododendron simsii HOM05D007139 ORTHO05D009171 9.6e-24 114.4 194 57.7
Ah.09g230020 Amaranthus hybridus HOM05D000263 ORTHO05D000213 2.1e-23 113.2 189 43.4
Gohir.D05G004250 Gossypium hirsutum HOM05D007139 ORTHO05D009171 2.1e-23 113.2 167 59.9
CAN.G32.11 Capsicum annuum HOM05D007139 ORTHO05D009171 4.8e-23 112.1 126 55.6
Oeu025690.1 Olea europaea HOM05D007139 ORTHO05D009171 4.8e-23 112.1 183 56.3
Psat0s3717g0080 Pisum sativum HOM05D007139 ORTHO05D009171 6.2e-23 111.7 144 48.6
CDE07G0879 Ceratophyllum demersum HOM05D007139 ORTHO05D009171 8.1e-23 111.3 126 55.6
Sc18g0007530 Simmondsia chinensis HOM05D007139 ORTHO05D009171 8.1e-23 111.3 153 64.7
Medtr4g127690 Medicago truncatula HOM05D007139 ORTHO05D009171 1.4e-22 110.5 130 53.8
Nitab4.5_0000055g0210 Nicotiana tabacum HOM05D007139 ORTHO05D009171 1.4e-22 110.5 190 44.2
CiPaw.07G194300 Carya illinoinensis HOM05D007139 ORTHO05D009171 4.0e-22 109.0 186 44.6
Sed0022431 Sechium edule HOM05D007139 ORTHO05D009171 6.9e-22 108.2 184 55.4
Sopen07g006630 Solanum pennellii HOM05D007139 ORTHO05D009171 6.9e-22 108.2 126 54.8
CsaV3_2G008540 Cucumis sativus L. HOM05D007139 ORTHO05D009171 1.2e-21 107.5 78 74.4
Eucgr.C02387 Eucalyptus grandis HOM05D007139 ORTHO05D009171 2.0e-21 106.7 136 66.9
A10p14810 Brassica napus HOM05D007139 ORTHO05D009171 3.4e-21 105.9 90 72.2
HanXRQChr12g0384691 Helianthus annuus HOM05D007139 ORTHO05D009171 4.5e-21 105.5 189 57.7
Nitab4.5_0013636g0010 Nicotiana tabacum HOM05D007139 ORTHO05D009171 4.5e-21 105.5 193 45.1
HPP92_017140 Vanilla planifolia HOM05D007139 ORTHO05D009171 5.8e-21 105.1 69 79.7
Ciclev10009657m.g Citrus clementina HOM05D007139 ORTHO05D009171 7.6e-21 104.8 182 41.8
Ca_21240_v3 Cicer arietinum L. HOM05D007139 ORTHO05D009171 1.3e-20 104.0 106 60.4
Hund09038 Selenicereus undatus HOM05D007139 ORTHO05D009171 2.9e-20 102.8 113 57.5
COL.COLO4_06001 Corchorus olitorius HOM05D007139 ORTHO05D009171 4.9e-20 102.1 186 42.5
Haze_21948 Corylus avellana HOM05D007139 ORTHO05D009171 1.4e-19 100.5 103 61.2
Migut.J01499 Erythranthe guttata HOM05D007139 ORTHO05D009171 1.9e-19 100.1 194 44.8
MSTRG.6235 Avicennia marina HOM05D007139 ORTHO05D009171 2.5e-19 99.8 180 38.3
vmacro13142 Vaccinium macrocarpon HOM05D007139 ORTHO05D009171 4.2e-19 99.0 184 54.3
PSO170G0255 Papaver somniferum HOM05D007139 ORTHO05D009171 7.1e-19 98.2 198 44.9
ATR0580G128 Amborella trichopoda HOM05D007139 ORTHO05D009171 1.6e-18 97.1 188 40.4
Ah.14g083710 Amaranthus hybridus HOM05D007139 ORTHO05D009171 2.7e-18 96.3 133 51.9
TPR.G5382 Trifolium pratense HOM05D007139 ORTHO05D009171 4.6e-18 95.5 84 67.9
Lju50A10T16 Lonicera japonica HOM05D007139 ORTHO05D009171 7.9e-18 94.7 79 64.6
Zm00001eb226320 Zea mays HOM05D007139 ORTHO05D009171 1.8e-17 93.6 104 57.7
PSO063G4029 Papaver somniferum HOM05D007139 ORTHO05D009171 3.0e-17 92.8 206 43.7
DCAR_020130 Daucus carota HOM05D007139 ORTHO05D009171 3.9e-17 92.4 133 65.4
Thecc.09G178100 Theobroma cacao HOM05D007139 ORTHO05D009171 3.9e-17 92.4 185 38.9
SEGI_32174 Sequoiadendron giganteum HOM05D007139 ORTHO05D009171 1.9e-16 90.1 93 55.9
Manes.14G157565 Manihot esculenta HOM05D007139 ORTHO05D009171 1.6e-15 87.0 186 39.2
Os06g0694800 Oryza sativa ssp. japonica HOM05D007139 ORTHO05D009171 3.7e-15 85.9 74 66.2
Lsat_1_v5_gn_1_19521 Lactuca sativa HOM05D007139 ORTHO05D009171 3.1e-14 82.8 121 62.8
Gohir.A05G003850 Gossypium hirsutum HOM05D007139 ORTHO05D009171 9.0e-14 81.3 103 53.4
Duzib168G1431 Durio zibethinus HOM05D007139 ORTHO05D009171 1.2e-13 80.9 188 37.8
BolC2t07558H Brassica oleracea HOM05D007139 ORTHO05D009171 5.8e-13 78.6 54 79.6
EL10Ac8g18300 Beta vulgaris HOM05D007139 ORTHO05D009171 8.4e-12 74.7 187 35.3
C02p14320 Brassica napus HOM05D007139 ORTHO05D009171 1.1e-11 74.3 48 79.2
CANSAT11G2567 Cannabis sativa HOM05D007139 ORTHO05D009171 1.4e-11 73.9 192 32.8
Duzib150G0167 Durio zibethinus HOM05D007139 ORTHO05D009171 3.0e-09 66.2 181 41.4


User provided reference genes

Program Settings