Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 3.4e-26 120.9 63 100.0
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 9.6e-21 102.8 63 82.5
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 6.3e-20 100.1 63 81.0
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 6.9e-19 96.7 63 81.0
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 4.5e-18 94.0 65 80.0
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 7.2e-16 86.7 61 72.1
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 7.2e-16 86.7 61 72.1
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 7.2e-16 86.7 61 72.1
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 7.2e-16 86.7 61 72.1
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 7.2e-16 86.7 61 72.1
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 9.3e-16 86.3 61 68.9
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 1.2e-15 85.9 61 68.9
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 1.2e-15 85.9 61 68.9
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 1.2e-15 85.9 56 75.0
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 1.6e-15 85.5 61 72.1
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 2.7e-15 84.7 61 75.4
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 3.6e-15 84.3 61 72.1
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 4.6e-15 84.0 61 67.2
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 4.6e-15 84.0 61 67.2
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 7.9e-15 83.2 61 68.9
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 1.5e-13 79.0 57 73.7
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 3.3e-13 77.8 55 69.1
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 4.3e-13 77.4 54 72.2
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 5.7e-13 77.0 61 68.9
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 5.7e-13 77.0 53 71.7
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 5.7e-13 77.0 53 71.7
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 1.3e-12 75.9 47 76.6
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 1.3e-12 75.9 54 70.4
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 1.6e-12 75.5 55 67.3
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 1.6e-12 75.5 55 67.3
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.2e-12 75.1 53 71.7
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 6.3e-12 73.6 54 66.7
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 8.2e-12 73.2 54 66.7
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 8.2e-12 73.2 53 67.9
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 8.2e-12 73.2 56 66.1
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 1.1e-11 72.8 52 67.3
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 1.1e-11 72.8 54 66.7
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 1.8e-11 72.0 55 67.3
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 3.1e-11 71.2 48 75.0
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 3.1e-11 71.2 51 66.7
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 3.1e-11 71.2 60 60.0
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 5.3e-11 70.5 55 65.5
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 6.9e-11 70.1 48 70.8
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 6.9e-11 70.1 51 66.7
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 9.1e-11 69.7 60 58.3
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 9.1e-11 69.7 55 67.3
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.2e-10 69.3 48 72.9
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 1.2e-10 69.3 54 64.8
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 1.2e-10 69.3 55 61.8
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 1.2e-10 69.3 44 68.2
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 1.5e-10 68.9 55 61.8
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 1.5e-10 68.9 50 72.0
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 1.5e-10 68.9 50 72.0
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 1.5e-10 68.9 48 68.8
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 2.0e-10 68.6 49 67.3
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 2.6e-10 68.2 49 69.4
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 2.6e-10 68.2 51 64.7
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 2.6e-10 68.2 44 77.3
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 3.4e-10 67.8 43 76.7
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 5.9e-10 67.0 44 72.7
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 1.0e-09 66.2 55 63.6
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 1.0e-09 66.2 53 58.5
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 1.3e-09 65.9 49 67.3
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 1.3e-09 65.9 46 69.6
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 1.3e-09 65.9 49 59.2
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 1.7e-09 65.5 52 65.4
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 2.2e-09 65.1 53 64.2
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 2.2e-09 65.1 49 67.3
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 3.8e-09 64.3 64 57.8
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 5.0e-09 63.9 54 63.0
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 1.1e-08 62.8 40 70.0
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 1.9e-08 62.0 54 61.1
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 1.9e-08 62.0 54 57.4
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 2.5e-08 61.6 52 53.8
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 5.5e-08 60.5 44 72.7
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 1.2e-07 59.3 42 71.4
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 1.6e-07 58.9 36 80.6
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 2.1e-07 58.5 36 80.6
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 7.9e-07 56.6 36 77.8
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 1.8e-06 55.5 35 77.1
Pp3c3_14890 Physcomitrium patens HOM05D007860 ORTHO05D009950 3.0e-06 54.7 51 54.9
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 3.9e-06 54.3 38 65.8
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 3.9e-06 54.3 41 65.9
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 3.9e-06 54.3 37 70.3


User provided reference genes

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