Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 9.0e-265 916.4 468 100.0
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 7.9e-253 876.7 468 96.2
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 4.4e-243 844.3 468 91.5
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.2e-242 842.0 469 92.1
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.1e-237 825.5 460 90.9
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.6e-232 809.3 461 88.5
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.6e-232 808.5 462 88.5
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.5e-232 807.7 471 87.5
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 7.7e-232 807.0 462 88.3
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 6.5e-231 803.9 462 87.9
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 2.7e-229 798.5 462 87.2
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.4e-228 796.2 462 87.4
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.8e-228 795.8 460 87.6
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 2.8e-226 788.5 468 85.5
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.7e-226 788.1 460 87.0
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 8.9e-196 687.2 464 75.4
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.6e-189 666.4 464 75.2
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-187 660.2 446 77.6
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 5.6e-166 588.2 464 63.8
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 9.9e-163 577.4 465 63.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.4e-161 573.5 464 62.1
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 5.6e-158 561.6 464 61.0
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.6e-157 560.1 465 60.6
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.4e-156 557.0 465 60.2
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 6.9e-156 554.7 462 59.7
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.2e-155 553.9 465 60.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.6e-155 552.7 705 48.8
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.6e-155 552.7 464 60.8
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 3.4e-155 552.4 466 59.7
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 3.8e-154 548.9 461 58.6
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.4e-153 547.0 461 58.6
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.5e-153 546.2 705 48.5
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 4.2e-153 545.4 464 60.1
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 5.5e-153 545.0 464 58.2
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.8e-151 540.0 449 60.6
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 3.9e-151 538.9 466 57.9
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 5.1e-151 538.5 465 59.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 5.1e-151 538.5 465 59.6
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.1e-150 537.3 463 59.2
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.5e-150 537.0 465 59.4
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.9e-150 536.6 463 59.0
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.3e-149 533.9 457 57.8
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.2e-149 531.6 463 57.9
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.8e-148 530.0 514 53.3
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 5.3e-148 528.5 448 59.2
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.2e-147 527.3 458 57.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.6e-147 526.2 463 57.2
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 3.4e-147 525.8 465 57.2
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 7.6e-147 524.6 456 56.8
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.0e-146 524.2 456 57.0
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.0e-146 524.2 466 56.7
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.2e-146 523.1 463 57.0
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 2.5e-145 519.6 464 55.8
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.5e-145 519.6 465 56.3
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 4.2e-145 518.8 464 55.8
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.5e-144 515.8 463 56.2
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 6.1e-144 515.0 464 55.6
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 5.1e-143 511.9 464 55.6
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.9e-142 510.0 464 53.7
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.5e-142 509.6 457 55.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 7.4e-142 508.1 452 55.5
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.3e-141 507.3 464 55.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.3e-141 507.3 464 56.0
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 3.7e-141 505.8 500 52.0
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.8e-140 503.4 464 55.8
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 4.1e-140 502.3 462 54.3
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 9.0e-140 501.1 457 55.6
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.6e-139 499.6 473 53.5
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.9e-139 498.4 437 56.3
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 2.9e-138 496.1 458 54.1
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.8e-138 495.7 455 55.4
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 6.5e-138 495.0 466 54.5
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 6.5e-138 495.0 467 54.4
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 3.2e-137 492.7 463 52.9
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 2.1e-136 490.0 464 52.2
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 6.1e-136 488.4 466 53.4
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 7.9e-136 488.0 466 54.3
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 7.9e-136 488.0 460 52.6
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.0e-135 487.6 464 52.4
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.4e-135 487.3 462 52.6
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 2.3e-135 486.5 447 52.8
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.5e-134 483.8 461 54.2
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 2.0e-134 483.4 466 51.7
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.7e-133 480.3 459 54.2
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.1e-132 477.6 459 51.6
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.4e-132 477.2 464 53.2
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 5.3e-132 475.3 464 53.4
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 6.9e-132 474.9 463 50.5
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.4e-131 472.6 455 50.1
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 3.0e-127 459.5 437 52.2
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 9.7e-126 454.5 456 50.2
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.1e-124 451.1 461 50.3
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.1e-124 451.1 449 49.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 9.1e-124 448.0 462 50.2
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.2e-123 447.6 421 54.6
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 2.6e-123 446.4 458 49.6
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.5e-123 445.7 461 49.5
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 9.4e-121 438.0 461 49.7
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 2.0e-118 430.3 495 46.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 4.8e-117 425.6 422 49.1
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.4e-116 423.3 455 50.1
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 2.5e-113 413.3 468 46.2
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 2.0e-110 403.7 462 47.2
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.7e-109 400.6 415 51.6
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 3.1e-108 396.4 463 44.9
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 7.7e-107 391.7 489 42.9
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 7.8e-91 338.6 291 55.3
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 3.7e-85 319.7 425 39.1
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.5e-81 307.0 465 36.8
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 7.3e-81 305.4 279 53.8
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 7.1e-76 288.9 489 35.6
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.5e-73 281.2 472 36.7
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 2.8e-72 276.9 530 34.9
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 3.2e-60 236.9 524 31.3
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.3e-58 231.5 328 42.4
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.8e-55 221.1 487 29.6
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.0e-50 205.3 127 79.5
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.0e-50 205.3 127 79.5
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.3e-49 200.3 124 79.0
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.3e-45 188.3 377 37.4
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.2e-43 181.8 105 84.8
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 2.1e-43 181.0 363 29.5
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.6e-40 171.4 193 46.1
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 3.1e-39 167.2 180 42.8
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.2e-38 165.2 180 42.2
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.8e-34 151.4 359 29.8
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 5.1e-34 149.8 127 56.7
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.8e-32 144.1 417 27.8
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 4.5e-30 136.7 115 55.7
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 2.9e-29 134.0 349 24.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 2.7e-27 127.5 217 38.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.0e-26 125.6 295 26.8
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 3.7e-16 90.5 172 32.6
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.4e-15 88.6 120 35.0
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.0e-13 80.1 72 58.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.5e-12 77.8 106 34.9
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 3.2e-12 77.4 106 34.0
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.0e-10 72.4 73 45.2


User provided reference genes

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