Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 4.1e-37 157.9 102 100.0
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.5e-34 147.5 102 96.1
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 6.1e-33 144.1 70 92.9
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-29 133.3 63 93.7
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-29 133.3 63 93.7
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-29 133.3 63 93.7
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.4e-29 132.9 66 92.4
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-29 132.5 102 84.3
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 2.4e-29 132.1 65 90.8
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 9.1e-29 130.2 64 90.6
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 9.1e-29 130.2 64 90.6
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 7.7e-28 127.1 102 70.6
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.5e-26 122.1 69 82.6
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 4.7e-25 117.9 63 85.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 6.8e-24 114.0 70 74.3
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.4e-21 106.3 71 66.2
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 1.8e-21 105.9 60 81.7
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.8e-21 105.9 68 72.1
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 4.1e-21 104.8 68 72.1
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 5.4e-21 104.4 68 70.6
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.2e-21 103.6 102 52.0
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.0e-19 100.1 68 64.7
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.0e-19 100.1 68 64.7
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-19 99.4 68 66.2
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.3e-19 99.0 102 51.0
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-19 99.0 68 66.2
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 3.8e-19 98.2 68 66.2
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 3.8e-19 98.2 68 66.2
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 8.6e-19 97.1 68 64.7
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 8.6e-19 97.1 68 66.2
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-18 96.3 68 66.2
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.5e-18 96.3 68 63.2
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-18 94.0 68 60.3
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-16 89.0 51 82.4
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 6.8e-16 87.4 68 52.9
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 8.9e-16 87.0 68 52.9
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 7.5e-15 84.0 65 53.8
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.9e-14 82.0 67 53.7
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.7e-14 81.6 65 52.3
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 6.4e-14 80.9 65 56.9
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.4e-13 79.7 67 53.7
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.8e-13 79.3 68 45.6
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.8e-13 79.3 65 52.3
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.8e-13 79.3 69 52.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 4.1e-13 78.2 68 54.4
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 9.2e-13 77.0 68 50.0
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.2e-12 76.6 68 54.4
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.6e-12 76.3 68 51.5
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.6e-12 76.3 68 51.5
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 2.7e-12 75.5 63 60.3
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 3.5e-12 75.1 69 47.8
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 4.6e-12 74.7 62 53.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.8e-12 73.9 68 50.0
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 7.8e-12 73.9 65 52.3
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.7e-11 72.8 68 50.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.3e-11 72.4 63 55.6
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.0e-11 72.0 65 50.8
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.0e-11 72.0 68 44.1
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 5.0e-11 71.2 63 52.4
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 6.6e-11 70.9 63 55.6
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.1e-10 70.1 63 50.8
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.5e-10 69.7 68 45.6
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.9e-10 69.3 66 47.0
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 3.3e-10 68.6 65 46.2
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 5.6e-10 67.8 68 39.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 5.6e-10 67.8 63 50.8
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 7.3e-10 67.4 62 51.6
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.3e-10 67.4 63 54.0
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.3e-10 67.4 63 54.0
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 9.5e-10 67.0 68 45.6
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.2e-09 66.6 68 38.2
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.6e-09 66.2 65 50.8
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.6e-09 66.2 63 54.0
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.1e-09 65.9 68 39.7
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.1e-09 65.9 68 39.7
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 2.1e-09 65.9 68 48.5
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 2.8e-09 65.5 62 53.2
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 3.6e-09 65.1 69 40.6
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 4.7e-09 64.7 68 38.2
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 4.7e-09 64.7 68 38.2
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 4.7e-09 64.7 69 47.8
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.7e-09 64.7 63 52.4
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 6.2e-09 64.3 68 39.7
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 6.2e-09 64.3 68 39.7
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 6.2e-09 64.3 68 39.7
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 6.2e-09 64.3 68 39.7
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 6.2e-09 64.3 68 39.7
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 6.2e-09 64.3 68 44.1
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 8.0e-09 63.9 63 50.8
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.8e-08 62.8 56 53.6
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 2.3e-08 62.4 63 52.4
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.1e-08 62.0 63 52.4
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 4.0e-08 61.6 68 36.8
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 4.0e-08 61.6 68 36.8
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 4.0e-08 61.6 68 36.8
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 4.0e-08 61.6 57 47.4
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 4.0e-08 61.6 64 48.4
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 5.2e-08 61.2 62 48.4
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 6.8e-08 60.8 64 46.9
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 6.8e-08 60.8 62 40.3
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 8.9e-08 60.5 53 52.8
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 8.9e-08 60.5 68 36.8
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.0e-07 59.3 68 38.2
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 5.8e-07 57.8 40 72.5
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 5.8e-07 57.8 63 42.9
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 5.8e-07 57.8 64 43.8
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 5.8e-07 57.8 64 43.8
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.8e-07 57.0 58 37.9
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 2.9e-06 55.5 68 41.2
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 2.9e-06 55.5 63 42.9
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 2.9e-06 55.5 68 41.2
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 3.7e-06 55.1 62 41.9
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 4.9e-06 54.7 68 33.8
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 4.9e-06 54.7 68 33.8
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 4.9e-06 54.7 68 33.8
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 8.3e-06 53.9 62 45.2
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 8.3e-06 53.9 68 42.6


User provided reference genes

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