Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 0.0e+00 1870.5 988 100.0
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 0.0e+00 1588.2 1005 86.4
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 0.0e+00 1501.9 999 83.1
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 0.0e+00 1358.6 1015 75.0
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 0.0e+00 1230.3 1016 72.4
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 0.0e+00 1109.4 858 73.7
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-305 1053.5 1068 62.2
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 3.7e-292 1008.4 1047 63.0
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 3.7e-292 1008.4 1047 63.0
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 4.2e-288 995.0 1032 60.1
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-287 993.0 1063 61.9
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-286 989.6 1036 60.2
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 2.8e-284 982.2 1083 60.8
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 1.7e-281 973.0 1038 59.9
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 6.5e-281 971.1 1038 59.8
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 3.2e-280 968.8 1034 59.5
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.8e-278 963.0 1022 62.2
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 3.0e-278 962.2 1029 61.3
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 9.7e-277 957.2 1026 61.6
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 5.9e-274 948.0 1047 60.1
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 2.2e-273 946.0 1054 59.6
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 6.5e-273 944.5 1028 60.4
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-245 853.6 1013 58.6
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 3.4e-229 799.3 880 61.0
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 3.7e-228 795.8 1082 54.7
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.2e-153 546.2 1079 45.1
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 6.8e-129 466.1 1019 42.0
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 4.7e-122 443.4 1028 41.6
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.8e-121 439.5 999 40.8
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.4e-120 436.8 1018 42.3
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.4e-118 431.0 1014 40.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 3.3e-115 420.6 1010 38.6
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 6.9e-97 359.8 986 36.9
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-96 357.8 986 36.9
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 5.8e-96 356.7 954 38.1
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-95 354.8 966 37.5
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.9e-95 354.4 967 36.3
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.1e-94 352.4 986 36.7
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.2e-94 350.5 964 36.0
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 3.5e-93 347.4 975 35.8
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-92 345.5 960 36.2
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 3.3e-91 340.9 975 35.5
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 5.3e-89 333.6 975 35.5
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 9.3e-70 269.6 1181 29.5
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.0e-68 266.2 1146 29.5
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 3.0e-68 264.6 1156 30.6
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 3.0e-68 264.6 1143 31.3
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 9.7e-67 259.6 797 34.4
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 3.7e-66 257.7 1158 29.4
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 6.9e-65 253.4 1163 29.1
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 6.9e-65 253.4 1164 29.6
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 9.1e-65 253.1 1164 29.0
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.4e-64 251.1 1170 28.6
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.9e-64 250.4 1208 28.9
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 3.8e-63 247.7 1219 28.4
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 5.0e-63 247.3 1220 28.4
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 3.2e-62 244.6 1171 30.1
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 9.4e-62 243.0 1168 28.9
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.7e-61 241.5 1181 28.6
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.9e-61 240.0 1199 28.6
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 8.8e-60 236.5 1091 29.0
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.1e-59 236.1 1196 28.4
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.5e-59 235.7 1135 28.5
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.5e-59 235.7 1208 28.6
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.6e-59 235.0 1208 28.7
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.6e-59 235.0 1112 30.1
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 2.6e-59 235.0 1199 28.7
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.3e-59 234.6 1167 28.9
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 4.4e-59 234.2 1181 28.6
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 4.4e-59 234.2 1209 28.0
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.4e-59 233.4 1095 28.2
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.7e-58 232.3 1214 28.4
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.7e-58 232.3 1187 28.2
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.1e-57 228.0 1209 27.5
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 3.1e-57 228.0 1109 29.5
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.5e-56 224.2 1187 27.5
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 4.5e-56 224.2 1028 29.1
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 7.7e-56 223.4 1056 28.5
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 7.7e-56 223.4 1056 28.5
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.7e-55 222.2 1197 28.7
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.2e-55 221.9 1032 31.1
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 3.2e-54 218.0 1113 27.5
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.2e-53 216.1 1197 27.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.6e-53 215.7 1227 27.5
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.6e-53 214.5 1115 27.6
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 6.1e-53 213.8 1217 27.8
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.0e-52 213.0 1235 27.6
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 6.7e-52 210.3 1175 26.9
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 2.6e-51 208.4 1249 27.5
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 2.4e-49 201.8 1021 28.3
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.2e-48 199.5 1201 26.4
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 3.5e-48 198.0 1148 27.0
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 5.9e-48 197.2 1190 26.1
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.0e-47 196.4 1189 26.1
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.7e-47 195.7 1171 27.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.9e-47 194.9 1197 26.1
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-46 192.6 682 32.6
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.5e-46 192.6 682 32.6
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 2.7e-45 188.3 1134 26.5
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.7e-45 188.3 508 35.0
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.6e-45 188.0 1116 26.8
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.3e-44 185.3 1144 26.9
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 2.3e-44 185.3 1190 26.0
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 5.2e-44 184.1 1059 27.3
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 8.8e-44 183.3 1126 27.2
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-43 182.2 1233 25.5
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.0e-43 182.2 1183 26.5
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.6e-43 181.8 970 28.0
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 3.3e-43 181.4 1140 26.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.2e-42 178.7 1193 28.1
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.8e-41 175.6 1189 26.8
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.1e-41 174.9 1092 26.1
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.0e-39 169.9 1053 27.2
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.5e-38 165.2 1259 25.3
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 9.4e-38 163.3 691 31.1
BcaC03g14237 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-37 162.9 145 65.5
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.8e-36 159.1 1114 26.7
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 3.0e-36 158.3 1167 26.4
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 6.8e-36 157.1 1244 26.0
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 8.8e-36 156.8 1092 28.0
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 4.4e-35 154.5 1256 25.2
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 7.5e-35 153.7 441 34.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.3e-34 152.9 949 26.3
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.7e-34 151.4 1229 25.7
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 8.3e-34 150.2 1112 26.1
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 3.1e-33 148.3 1176 26.1
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 3.1e-33 148.3 992 27.9
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 9.1e-33 146.7 977 26.4
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.6e-32 146.0 989 25.6
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.6e-32 146.0 1122 25.4
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.0e-32 145.6 329 36.8
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.7e-32 145.2 1120 25.1
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.5e-32 144.8 1012 24.4
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 4.5e-32 144.4 335 36.4
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 4.5e-32 144.4 771 27.6
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.7e-31 142.5 999 27.2
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.8e-31 141.4 744 28.2
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 6.5e-31 140.6 1088 24.1
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 3.3e-30 138.3 432 34.0
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 7.2e-30 137.1 1011 25.2
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 6.1e-29 134.0 1122 24.2
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 1.0e-28 133.3 379 34.3
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.0e-28 133.3 1027 26.2
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.0e-28 131.7 330 31.8
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 2.6e-27 128.6 935 24.2
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 4.4e-27 127.9 1129 24.4
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.7e-27 127.5 1104 24.0
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 7.5e-27 127.1 1101 24.3
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.3e-26 126.3 397 32.0
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 6.3e-26 124.0 671 27.4
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 6.3e-26 124.0 632 27.7
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 3.1e-25 121.7 322 34.2
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.2e-24 119.8 216 45.8
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 2.0e-24 119.0 1038 24.2
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.8e-24 117.1 402 32.6
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 7.8e-24 117.1 218 41.3
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 7.8e-24 117.1 967 25.3
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.0e-23 116.7 535 28.2
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 1.3e-23 116.3 504 30.2
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 8.6e-23 113.6 1080 24.7
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.1e-22 113.2 334 31.4
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 4.0e-20 104.8 737 24.2
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 4.4e-19 101.3 279 33.0
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.0e-16 90.9 291 31.3
BcaC03g16336 Brassica carinata HOM05D021359 ORTHO05D016065 4.7e-13 81.3 115 47.0
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 7.0e-09 67.4 199 29.1
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 3.9e-07 61.6 106 37.7
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 5.6e-06 57.8 231 27.3


User provided reference genes

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