Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 8.9e-274 946.4 510 100.0
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.6e-227 792.7 541 83.0
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 4.1e-186 655.2 539 72.7
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 3.4e-164 582.4 562 64.4
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 5.7e-156 555.1 549 64.5
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 4.6e-113 412.5 558 52.5
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 2.5e-98 363.6 603 45.9
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 5.0e-91 339.3 299 67.6
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-76 291.6 317 58.4
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 2.9e-75 287.0 316 57.6
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 2.5e-74 283.9 568 43.1
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.0e-72 276.9 558 42.3
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 2.0e-68 264.2 615 38.9
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 3.5e-68 263.5 577 40.2
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 7.7e-68 262.3 316 55.4
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 2.9e-67 260.4 589 40.1
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 2.5e-66 257.3 586 40.1
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.2e-66 256.5 566 40.1
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-65 255.0 578 39.8
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 2.3e-64 250.8 587 38.0
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 5.2e-64 249.6 300 55.3
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 5.2e-64 249.6 300 55.3
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 1.3e-62 245.0 576 39.9
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 2.8e-62 243.8 565 38.9
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 6.3e-62 242.7 552 36.8
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 6.3e-62 242.7 551 38.3
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 1.4e-61 241.5 298 55.0
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 1.8e-61 241.1 549 38.6
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.8e-61 241.1 573 37.3
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 3.5e-60 236.9 583 39.6
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.0e-59 235.3 546 35.9
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 1.3e-59 235.0 551 38.8
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 1.3e-59 235.0 554 36.5
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.2e-59 234.2 549 37.7
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 2.9e-59 233.8 536 38.4
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 5.0e-59 233.0 545 36.3
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 8.5e-59 232.3 571 35.7
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.1e-58 231.9 571 35.7
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.5e-58 231.5 545 36.0
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 2.5e-58 230.7 577 38.3
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.2e-58 230.3 550 37.1
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 4.2e-58 229.9 580 36.7
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 9.4e-58 228.8 540 37.6
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 1.6e-57 228.0 577 38.1
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 1.6e-57 228.0 537 38.2
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 8.0e-57 225.7 554 36.3
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 6.8e-56 222.6 551 35.9
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 8.8e-56 222.2 550 36.4
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 2.6e-55 220.7 539 37.1
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 2.6e-55 220.7 539 37.1
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 2.6e-55 220.7 539 37.1
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 3.4e-55 220.3 550 36.2
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 2.2e-54 217.6 556 36.3
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 4.8e-54 216.5 541 37.9
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 2.4e-53 214.2 502 38.0
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 4.1e-53 213.4 565 36.3
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 7.0e-53 212.6 542 36.7
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.7e-52 210.7 542 36.5
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.7e-52 210.7 553 36.7
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 1.3e-51 208.4 554 36.3
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 1.3e-51 208.4 534 36.3
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 3.8e-51 206.8 547 36.4
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.5e-50 204.9 548 35.2
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 2.1e-49 201.1 593 34.7
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 3.6e-49 200.3 547 34.9
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.0e-48 198.7 530 37.0
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.0e-48 198.7 627 33.7
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 1.4e-48 198.4 541 35.3
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 6.8e-48 196.1 593 35.6
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 1.2e-47 195.3 527 36.2
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 1.5e-47 194.9 531 35.6
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.5e-47 194.9 530 36.6
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 1.5e-47 194.9 619 33.6
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 2.6e-47 194.1 533 34.7
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 3.4e-47 193.7 585 34.4
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 2.2e-46 191.0 588 35.5
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 3.7e-46 190.3 570 35.4
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 4.9e-46 189.9 569 36.0
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.3e-46 189.5 585 34.0
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 8.3e-46 189.1 451 37.9
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 2.4e-45 187.6 627 32.7
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.1e-45 186.8 627 32.9
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 1.6e-44 184.9 520 36.3
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 3.5e-44 183.7 593 33.7
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 7.8e-44 182.6 528 35.8
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 1.3e-43 181.8 519 35.8
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 1.3e-43 181.8 582 34.0
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 2.5e-42 177.6 544 34.7
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 9.5e-42 175.6 596 32.6
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 9.5e-42 175.6 527 34.0
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 1.4e-40 171.8 577 33.1
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.3e-40 171.0 543 32.8
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 5.2e-40 169.9 553 33.5
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 6.8e-40 169.5 555 31.5
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 2.0e-39 167.9 551 33.4
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 2.6e-39 167.5 548 32.8
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 3.4e-39 167.2 552 31.9
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 7.5e-39 166.0 544 33.3
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.3e-38 165.2 550 32.0
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 2.2e-38 164.5 533 33.8
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 2.9e-38 164.1 548 32.5
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 3.7e-38 163.7 530 33.4
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 4.9e-38 163.3 525 32.6
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 4.1e-37 160.2 525 32.8
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.1e-37 160.2 538 32.0
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 5.4e-37 159.8 508 33.3
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 7.0e-37 159.5 532 32.7
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.0e-36 157.9 460 34.8
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 3.5e-36 157.1 537 33.1
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 1.0e-35 155.6 544 32.4
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 3.9e-35 153.7 534 33.7
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 3.9e-35 153.7 560 32.7
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.8e-33 147.5 448 32.4
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 1.4e-32 145.2 302 41.4
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 6.8e-32 142.9 531 31.6
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.5e-31 141.7 537 31.5
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 6.4e-30 136.3 605 31.1
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 8.3e-30 136.0 406 35.0
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 1.4e-29 135.2 457 33.9
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 2.4e-29 134.4 578 31.1
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 4.1e-29 133.7 529 31.4
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.2e-28 132.1 651 28.9
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.6e-28 130.2 428 34.3
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.0e-27 127.5 371 36.7
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 3.9e-27 127.1 602 28.4
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 5.1e-27 126.7 568 31.2
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 3.3e-26 124.0 642 29.3
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.3e-26 123.6 424 34.4
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 4.3e-26 123.6 408 33.6
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.6e-25 121.7 700 27.1
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 4.7e-25 120.2 404 33.7
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 3.1e-24 117.5 556 29.9
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 1.2e-23 115.5 483 31.1
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 1.5e-23 115.2 581 28.6
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 4.4e-23 113.6 525 29.3
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 5.8e-23 113.2 421 30.4
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 1.7e-22 111.7 512 29.1
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 3.7e-22 110.5 482 30.5
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 3.7e-22 110.5 265 34.3
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 4.9e-22 110.2 464 30.4
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 6.4e-22 109.8 406 32.0
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 6.4e-22 109.8 406 32.0
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 7.1e-21 106.3 552 28.6
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 9.2e-21 105.9 520 29.8
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-20 105.5 458 29.9
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.0e-19 102.4 327 36.4
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 1.3e-19 102.1 509 29.5
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 2.3e-19 101.3 425 30.1
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 3.9e-19 100.5 326 30.1
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 6.6e-19 99.8 498 28.1
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 8.6e-19 99.4 425 29.9
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 2.5e-18 97.8 402 30.8
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.5e-18 97.8 560 27.9
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 5.6e-18 96.7 403 30.3
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 7.3e-18 96.3 403 30.8
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 9.5e-18 95.9 442 30.8
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 3.1e-16 90.9 278 31.3
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 1.5e-15 88.6 456 29.2
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 5.8e-15 86.7 501 29.9
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 7.6e-15 86.3 343 29.4
Oeu062673.1 Olea europaea HOM05D003079 ORTHO05D003461 5.4e-13 80.1 277 34.7
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 7.1e-13 79.7 428 28.3
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 3.5e-12 77.4 152 34.9
Lsat_1_v5_gn_9_88621 Lactuca sativa HOM05D003079 ORTHO05D003461 3.0e-11 74.3 513 25.5
ATR0751G003 Amborella trichopoda HOM05D003079 ORTHO05D003461 7.3e-10 69.7 332 31.6
Lalb_Chr18g0048661 Lupinus albus HOM05D003079 ORTHO05D003461 1.3e-09 68.9 185 34.1
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 2.1e-09 68.2 215 29.3
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 2.1e-09 68.2 518 26.3
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 4.8e-09 67.0 594 23.7
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 6.2e-09 66.6 267 30.3
Ca_09552_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 6.2e-09 66.6 132 38.6
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 1.1e-08 65.9 128 36.7
Ca_06048_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 1.4e-08 65.5 105 43.8
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 1.4e-08 65.5 344 25.6
Zm00001eb316300 Zea mays HOM05D003079 ORTHO05D003461 4.0e-08 63.9 544 26.3
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 6.9e-08 63.2 551 25.8
Haze_07774 Corylus avellana HOM05D003079 ORTHO05D003461 2.0e-07 61.6 70 58.6
Haze_20425 Corylus avellana HOM05D003079 ORTHO05D003461 2.0e-07 61.6 98 48.0
TPR.G28965 Trifolium pratense HOM05D003079 ORTHO05D003461 4.4e-07 60.5 216 28.2
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.4e-07 60.5 249 32.1
Ca_00014_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 3.8e-06 57.4 169 29.6
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 4.9e-06 57.0 549 25.1


User provided reference genes

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