Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 5.5e-259 897.1 458 100.0
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.6e-253 879.0 458 97.8
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.3e-251 870.9 458 97.2
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.0e-250 866.7 458 96.7
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 3.0e-249 864.8 459 96.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 4.6e-245 850.9 459 94.1
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.7e-244 849.0 458 94.3
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.5e-243 845.9 459 94.1
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.5e-243 845.9 458 93.9
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 9.5e-243 843.2 459 93.5
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 9.5e-243 843.2 458 94.1
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 5.2e-241 837.4 459 93.0
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.6e-240 835.1 456 93.4
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 3.5e-237 824.7 459 91.3
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.5e-235 819.3 459 91.7
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.2e-232 809.7 461 90.5
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 6.4e-223 777.3 460 85.2
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 6.0e-213 744.2 386 96.6
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.3e-212 743.0 382 96.9
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 5.6e-203 711.1 453 79.9
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.6e-202 709.5 454 78.4
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 9.0e-201 703.7 455 78.0
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.7e-197 692.2 416 82.5
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.3e-196 689.9 453 76.6
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.0e-196 688.7 459 76.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.5e-195 686.4 453 76.2
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 4.3e-195 684.9 455 80.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.3e-194 683.3 453 75.9
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 8.1e-194 680.6 414 81.6
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.4e-193 679.9 437 79.2
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 2.4e-193 679.1 398 83.9
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 4.0e-193 678.3 452 75.9
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.4e-192 675.2 457 74.0
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 7.6e-192 674.1 462 74.5
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.7e-191 672.9 457 75.1
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.7e-191 672.9 458 74.5
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 2.2e-191 672.5 450 77.1
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.8e-191 671.8 462 76.0
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 6.5e-191 671.0 454 74.9
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 8.4e-191 670.6 455 75.6
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.1e-190 670.2 451 76.3
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.4e-190 669.8 404 82.7
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.9e-190 669.5 412 81.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.9e-190 669.5 451 76.5
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 4.2e-190 668.3 415 80.7
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 5.5e-190 667.9 463 73.4
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 5.5e-190 667.9 404 82.4
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.1e-189 666.0 458 75.1
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.1e-189 666.0 411 79.3
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 6.0e-189 664.5 384 85.2
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 7.9e-189 664.1 403 82.1
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 2.3e-188 662.5 439 75.2
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 2.3e-188 662.5 404 81.4
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 3.0e-188 662.1 460 73.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 3.0e-188 662.1 404 81.9
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.9e-188 661.8 456 74.1
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 3.9e-188 661.8 398 81.2
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 3.9e-188 661.8 454 73.3
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.9e-188 661.8 396 81.6
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 5.1e-188 661.4 387 83.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.9e-187 659.4 454 72.9
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 3.3e-187 658.7 386 81.9
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 4.3e-187 658.3 455 72.7
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 5.7e-187 657.9 404 80.2
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 5.7e-187 657.9 390 83.1
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 9.6e-187 657.1 432 76.9
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.6e-186 656.4 428 77.8
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.6e-186 656.4 396 82.6
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.6e-186 656.4 457 72.9
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 2.1e-186 656.0 438 75.8
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.1e-186 656.0 457 73.1
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.2e-186 654.1 413 77.7
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 8.2e-186 654.1 460 73.7
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 8.2e-186 654.1 458 72.5
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.1e-185 653.7 432 76.6
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.1e-185 653.7 427 75.6
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.8e-185 652.9 455 74.5
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.8e-185 652.9 459 74.5
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.4e-185 652.5 429 76.7
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 4.1e-185 651.7 456 74.1
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 9.0e-185 650.6 380 82.6
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.2e-184 650.2 457 72.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.0e-184 649.4 454 72.7
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 3.4e-184 648.7 383 81.7
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 3.4e-184 648.7 395 79.5
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 7.6e-184 647.5 454 71.6
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.9e-183 645.6 387 81.9
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 2.9e-183 645.6 457 71.6
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.5e-183 644.0 457 71.3
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 8.5e-183 644.0 456 71.5
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.1e-182 643.7 385 81.6
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.1e-182 643.7 457 71.6
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.1e-182 643.7 447 73.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.1e-182 643.7 405 79.3
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.5e-182 642.5 463 70.2
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.5e-182 642.5 457 71.1
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 4.2e-182 641.7 394 80.7
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 5.5e-182 641.3 439 73.3
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.2e-181 640.2 455 70.5
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 3.0e-180 635.6 453 70.9
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 6.5e-175 617.8 486 67.1
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.1e-174 617.1 404 74.3
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.9e-174 616.3 421 73.4
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 5.7e-171 604.7 409 73.6
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 2.8e-170 602.4 434 70.3
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.1e-166 590.5 429 67.6
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.0e-156 557.4 465 64.3
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.0e-153 544.7 356 71.9
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.7e-152 542.7 279 98.6
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 5.0e-151 538.5 410 65.9
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.2e-148 528.5 371 74.1
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 4.4e-147 525.4 378 68.0
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 5.4e-145 518.5 466 62.0
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 5.0e-143 511.9 387 66.1
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 6.5e-143 511.5 452 61.3
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.0e-137 491.5 385 61.6
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-135 487.6 345 73.3
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.2e-133 480.7 357 66.7
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.0e-132 477.6 365 64.1
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 4.4e-131 472.2 359 66.0
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 3.5e-128 462.6 276 81.5
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.7e-122 443.7 252 88.1
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.7e-120 436.4 316 69.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.5e-120 436.0 289 70.9
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.8e-117 426.4 288 75.3
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.8e-116 423.7 432 55.3
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.1e-113 411.8 367 59.9
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 3.1e-108 396.4 329 66.3
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.5e-104 382.9 317 67.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.3e-103 380.9 234 85.0
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.4e-99 365.9 256 73.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.4e-97 360.9 211 84.8
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.6e-96 357.5 358 53.6
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.8e-93 346.7 329 52.9
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.1e-89 334.7 201 78.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 9.0e-84 315.1 226 72.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 2.6e-75 287.0 211 68.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.0e-71 273.5 174 76.4
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.1e-65 255.0 214 61.2
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 6.7e-63 245.7 214 59.8
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 1.5e-59 234.6 124 87.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 5.9e-59 232.6 372 40.1
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 2.9e-58 230.3 136 82.4
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.1e-54 218.4 291 41.9
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 7.4e-46 189.1 134 68.7
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 9.7e-38 162.2 113 74.3
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.2e-37 159.1 84 89.3
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 5.3e-36 156.4 112 73.2
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 5.3e-36 156.4 152 60.5
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.1e-33 148.7 112 69.6
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 6.6e-26 122.9 77 76.6
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 8.0e-24 115.9 231 35.9
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 9.8e-22 109.0 84 66.7
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 6.3e-21 106.3 117 53.0
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 5.0e-18 96.7 60 85.0
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 4.3e-17 93.6 60 80.0
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 5.2e-15 86.7 68 64.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.4e-14 83.6 58 62.1
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.7e-13 81.6 50 74.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.0e-10 72.4 44 77.3


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