Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G56070 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 3.1e-60 235.0 120 100.0
Carub.0008s1638 Capsella rubella HOM05D002540 ORTHO05D002672 4.4e-14 81.6 60 61.7
A10p13240 Brassica napus HOM05D002540 ORTHO05D002672 2.4e-12 75.9 60 60.0
BraA10t43422Z Brassica rapa HOM05D002540 ORTHO05D002672 2.4e-12 75.9 60 60.0
CARHR269420 Cardamine hirsuta HOM05D002540 ORTHO05D002672 2.4e-12 75.9 60 60.0
BcaB08g35970 Brassica carinata HOM05D002540 ORTHO05D002672 5.4e-12 74.7 60 58.3
BcaC04g20163 Brassica carinata HOM05D002540 ORTHO05D002672 5.4e-12 74.7 60 58.3
C09p47130 Brassica napus HOM05D002540 ORTHO05D002672 5.4e-12 74.7 60 58.3
BolC9t57568H Brassica oleracea HOM05D002540 ORTHO05D002672 5.4e-12 74.7 60 58.3
Sp6g17890 Schrenkiella parvula HOM05D002540 ORTHO05D002672 2.7e-11 72.4 60 56.7
AL8G31630 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 4.5e-11 71.6 60 58.3
AT5G56050 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 1.0e-10 70.5 60 58.3
Thhalv10015852m.g Eutrema salsugineum HOM05D002540 ORTHO05D002672 2.3e-10 69.3 60 58.3
CARHR234080 Cardamine hirsuta HOM05D002540 ORTHO05D002672 5.5e-09 64.7 57 50.9
BcaC09g50716 Brassica carinata HOM05D002540 ORTHO05D002672 1.2e-08 63.5 59 49.2
C01p22480 Brassica napus HOM05D002540 ORTHO05D002672 1.2e-08 63.5 59 49.2
BolC1t02179H Brassica oleracea HOM05D002540 ORTHO05D002672 1.2e-08 63.5 59 49.2
THA.LOC104811688 Tarenaya hassleriana HOM05D002540 ORTHO05D002672 1.2e-08 63.5 59 49.2
AL8G31640 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 1.6e-08 63.2 40 70.0
AT4G26490 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 2.1e-08 62.8 59 52.5
CAN.G623.45 Capsicum annuum HOM05D002540 ORTHO05D002672 2.1e-08 62.8 50 56.0
Nitab4.5_0000152g0220 Nicotiana tabacum HOM05D002540 ORTHO05D002672 2.1e-08 62.8 50 56.0
Sp7g24450 Schrenkiella parvula HOM05D002540 ORTHO05D002672 2.1e-08 62.8 59 50.8
Ah.12g058290 Amaranthus hybridus HOM05D002540 ORTHO05D002672 2.8e-08 62.4 62 43.5
A01p17760 Brassica napus HOM05D002540 ORTHO05D002672 3.6e-08 62.0 59 49.2
BraA01t01731Z Brassica rapa HOM05D002540 ORTHO05D002672 3.6e-08 62.0 59 49.2
Carub.0007s1439 Capsella rubella HOM05D002540 ORTHO05D002672 3.6e-08 62.0 59 52.5
Aa31LG5G11860 Aethionema arabicum HOM05D002540 ORTHO05D002672 4.7e-08 61.6 59 49.2
Thhalv10027581m.g Eutrema salsugineum HOM05D002540 ORTHO05D002672 6.1e-08 61.2 59 50.8
BcaNung02409 Brassica carinata HOM05D002540 ORTHO05D002672 8.0e-08 60.8 59 47.5
BcaNung02411 Brassica carinata HOM05D002540 ORTHO05D002672 8.0e-08 60.8 59 47.5
CSS0001502 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 8.0e-08 60.8 53 50.9
Lsat_1_v5_gn_9_89201 Lactuca sativa HOM05D002540 ORTHO05D002672 8.0e-08 60.8 103 35.9
Actinidia10574 Actinidia chinensis HOM05D002540 ORTHO05D002672 1.0e-07 60.5 53 50.9
CSS0030979 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 1.4e-07 60.1 53 50.9
CDE10G1049 Ceratophyllum demersum HOM05D002540 ORTHO05D002672 1.4e-07 60.1 74 37.8
Peaxi162Scf00232g00110 Petunia axillaris HOM05D002540 ORTHO05D002672 1.4e-07 60.1 46 54.3
SalBow8G2302 Salvia bowleyana HOM05D002540 ORTHO05D002672 1.4e-07 60.1 52 50.0
SalBow8G4012 Salvia bowleyana HOM05D002540 ORTHO05D002672 1.4e-07 60.1 52 50.0
EL10Ac2g02478 Beta vulgaris HOM05D002540 ORTHO05D002672 1.8e-07 59.7 62 43.5
AL7G26430 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 2.3e-07 59.3 59 49.2
AUR62017161 Chenopodium quinoa HOM05D002540 ORTHO05D002672 3.0e-07 58.9 62 43.5
MELO3C013206.2 Cucumis melo HOM05D002540 ORTHO05D002672 3.0e-07 58.9 64 42.2
Lalb_Chr10g0107541 Lupinus albus HOM05D002540 ORTHO05D002672 3.0e-07 58.9 52 48.1
PGSC0003DMG400022154 Solanum tuberosum HOM05D002540 ORTHO05D002672 3.0e-07 58.9 50 52.0
CiPaw.11G207800 Carya illinoinensis HOM05D002540 ORTHO05D002672 4.0e-07 58.5 53 43.4
SGA_v2.0_scaffold168G38586 Striga asiatica HOM05D002540 ORTHO05D002672 5.2e-07 58.2 59 47.5
ClCG09G021630 Citrullus lanatus HOM05D002540 ORTHO05D002672 6.8e-07 57.8 51 52.9
Lj1P896T35 Lonicera japonica HOM05D002540 ORTHO05D002672 6.8e-07 57.8 91 36.3
MBI15_g19866_MAGBIO Magnolia biondii HOM05D002540 ORTHO05D002672 6.8e-07 57.8 93 32.3
Rhsim06G0233100 Rhododendron simsii HOM05D002540 ORTHO05D002672 6.8e-07 57.8 53 47.2
Sopen07g034100 Solanum pennellii HOM05D002540 ORTHO05D002672 6.8e-07 57.8 102 36.3
vmacro11620 Vaccinium macrocarpon HOM05D002540 ORTHO05D002672 6.8e-07 57.8 53 45.3
Cc05_g15450 Coffea canephora HOM05D002540 ORTHO05D002672 1.2e-06 57.0 56 44.6
arahy.Tifrunner.gnm1.ann1.0TKI11 Arachis hypogaea HOM05D002540 ORTHO05D002672 1.5e-06 56.6 52 48.1
arahy.Tifrunner.gnm1.ann1.8GRR8U Arachis hypogaea HOM05D002540 ORTHO05D002672 1.5e-06 56.6 52 48.1
EL10Ac4g08478 Beta vulgaris HOM05D002540 ORTHO05D002672 1.5e-06 56.6 56 46.4
CSS0020481 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 1.5e-06 56.6 51 49.0
CSS0029249 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 1.5e-06 56.6 51 49.0
Migut.M01615 Erythranthe guttata HOM05D002540 ORTHO05D002672 1.5e-06 56.6 63 44.4
Manes.05G202300 Manihot esculenta HOM05D002540 ORTHO05D002672 1.5e-06 56.6 87 31.0
Oeu040392.1 Olea europaea HOM05D002540 ORTHO05D002672 1.5e-06 56.6 67 37.3
Solyc07g065910.1 Solanum lycopersicum HOM05D002540 ORTHO05D002672 1.5e-06 56.6 102 35.3
CsaV3_7G021460 Cucumis sativus L. HOM05D002540 ORTHO05D002672 2.0e-06 56.2 51 49.0
Eucgr.F02015 Eucalyptus grandis HOM05D002540 ORTHO05D002672 2.0e-06 56.2 49 44.9
Lsat_1_v5_gn_5_301 Lactuca sativa HOM05D002540 ORTHO05D002672 2.0e-06 56.2 53 43.4
Nn1g07587 Nelumbo nucifera HOM05D002540 ORTHO05D002672 2.0e-06 56.2 53 43.4
QL08p002517 Quercus lobata HOM05D002540 ORTHO05D002672 2.0e-06 56.2 53 45.3
arahy.Tifrunner.gnm1.ann1.I0CGCG Arachis hypogaea HOM05D002540 ORTHO05D002672 2.6e-06 55.8 51 45.1
arahy.Tifrunner.gnm1.ann1.TIKF5B Arachis hypogaea HOM05D002540 ORTHO05D002672 2.6e-06 55.8 51 45.1
Potri.011G165500 Populus trichocarpa HOM05D002540 ORTHO05D002672 2.6e-06 55.8 87 31.0
VMungo0540G1137 Vigna mungo HOM05D002540 ORTHO05D002672 2.6e-06 55.8 50 44.0
Cfa021907 Carpinus fangiana HOM05D002540 ORTHO05D002672 3.4e-06 55.5 51 45.1
Lj6g0007577 Lotus japonicus HOM05D002540 ORTHO05D002672 5.7e-06 54.7 52 42.3
Nn1g07714 Nelumbo nucifera HOM05D002540 ORTHO05D002672 5.7e-06 54.7 93 33.3
Sabra11G0140000 Salix brachista HOM05D002540 ORTHO05D002672 5.7e-06 54.7 87 29.9
Sc20g0000120 Simmondsia chinensis HOM05D002540 ORTHO05D002672 7.5e-06 54.3 56 39.3
TAR624G0818 Trochodendron aralioides HOM05D002540 ORTHO05D002672 7.5e-06 54.3 51 45.1
Atru.chr2.3885 Acer truncatum HOM05D002540 ORTHO05D002672 9.8e-06 53.9 52 44.2
Potri.001G468400 Populus trichocarpa HOM05D002540 ORTHO05D002672 9.8e-06 53.9 53 39.6
Prupe.6G029700 Prunus persica HOM05D002540 ORTHO05D002672 9.8e-06 53.9 49 44.9
RcHm_v2.0_Chr5g0075341 Rosa chinensis HOM05D002540 ORTHO05D002672 9.8e-06 53.9 87 34.5
SGA_v2.0_scaffold42G15944 Striga asiatica HOM05D002540 ORTHO05D002672 9.8e-06 53.9 50 44.0
VMungo0647G0287 Vigna mungo HOM05D002540 ORTHO05D002672 9.8e-06 53.9 52 48.1


User provided reference genes

Program Settings