Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 8.2e-137 490.3 239 100.0
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.3e-123 446.4 239 91.2
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 3.8e-118 428.3 240 87.5
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.8e-115 419.5 239 85.8
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 3.9e-115 418.3 239 85.4
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 6.7e-115 417.5 239 87.0
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.1e-114 416.8 239 83.7
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.5e-114 416.4 239 84.1
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 2.0e-114 416.0 237 84.8
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.8e-112 409.5 237 82.3
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.4e-112 409.1 236 83.1
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 5.9e-111 404.4 237 81.9
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 2.6e-103 379.0 235 77.9
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 4.1e-96 355.1 234 71.4
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 9.1e-96 354.0 207 81.6
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.6e-95 353.2 235 72.3
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.0e-95 352.8 207 80.7
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 5.9e-95 351.3 237 71.3
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 7.7e-95 350.9 208 82.7
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 2.9e-94 349.0 208 81.7
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 3.8e-94 348.6 208 81.7
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 3.8e-94 348.6 235 70.2
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 5.0e-94 348.2 238 67.2
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 5.0e-94 348.2 245 67.3
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 6.5e-94 347.8 238 69.7
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 8.5e-94 347.4 208 82.2
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.1e-93 347.1 243 68.3
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.6e-92 343.2 247 66.0
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 1.6e-92 343.2 243 67.1
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.1e-92 342.8 243 68.3
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 2.7e-92 342.4 234 67.1
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.6e-92 342.0 234 70.1
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 4.7e-92 341.7 242 68.2
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 6.1e-92 341.3 243 67.5
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.0e-91 340.5 243 67.9
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.0e-91 340.5 242 67.4
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.4e-91 340.1 237 66.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.4e-91 340.1 247 66.8
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.8e-91 339.7 237 68.4
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.8e-91 339.7 244 67.6
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 3.0e-91 339.0 243 67.5
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 4.0e-91 338.6 243 67.1
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 5.2e-91 338.2 244 65.2
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 5.2e-91 338.2 243 67.1
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 5.2e-91 338.2 243 65.0
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 8.8e-91 337.4 245 66.5
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 8.8e-91 337.4 243 67.5
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.0e-90 336.3 243 67.1
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 2.6e-90 335.9 237 65.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 4.4e-90 335.1 243 66.7
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 5.7e-90 334.7 243 65.4
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 7.5e-90 334.3 243 66.3
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.3e-89 333.6 237 65.4
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.2e-89 332.8 237 65.8
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 2.8e-89 332.4 247 63.2
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.7e-89 332.0 237 65.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 8.3e-89 330.9 247 64.0
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 8.3e-89 330.9 244 65.2
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 8.3e-89 330.9 237 65.8
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.4e-88 330.1 237 64.6
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.8e-88 329.7 243 64.6
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 3.1e-88 328.9 237 65.0
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 5.4e-88 328.2 236 66.5
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 7.0e-88 327.8 242 65.3
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 7.0e-88 327.8 237 65.4
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 9.1e-88 327.4 237 64.6
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.7e-87 325.9 243 64.2
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 2.7e-87 325.9 235 66.0
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 3.5e-87 325.5 225 68.0
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 4.5e-87 325.1 248 61.7
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.0e-86 323.9 244 64.3
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 2.9e-86 322.4 240 66.2
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.9e-86 322.4 235 66.4
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 6.5e-86 321.2 245 63.7
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.1e-85 320.5 238 65.1
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.5e-85 320.1 244 63.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.9e-85 319.7 280 58.6
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 4.2e-85 318.5 245 62.4
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 5.5e-85 318.2 235 66.0
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 5.5e-85 318.2 243 65.8
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 9.5e-85 317.4 242 65.3
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.6e-84 316.6 254 61.8
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.6e-84 316.6 243 63.0
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 2.1e-84 316.2 242 62.4
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 2.8e-84 315.8 216 68.5
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 2.3e-83 312.8 216 68.5
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.8e-81 305.8 235 64.3
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 7.0e-80 301.2 271 57.2
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 7.8e-79 297.7 243 61.7
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.5e-77 292.7 168 85.1
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 2.5e-77 292.7 199 68.8
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.6e-76 290.0 199 68.8
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.6e-76 288.9 200 68.0
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 1.8e-75 286.6 264 54.9
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 7.5e-74 281.2 196 67.3
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.8e-74 280.8 216 63.4
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 2.2e-73 279.6 178 73.0
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.7e-73 278.9 233 59.7
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 3.7e-73 278.9 192 67.7
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.4e-72 276.9 243 58.4
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.0e-72 274.6 239 53.6
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.6e-71 273.5 239 53.1
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.6e-71 271.9 239 54.8
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 7.8e-71 271.2 200 65.0
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.3e-70 270.4 203 65.5
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.9e-69 266.5 195 64.6
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 4.3e-69 265.4 238 53.8
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.6e-68 263.5 239 51.9
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.0e-68 261.2 240 51.2
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.1e-67 260.8 185 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.0e-63 245.0 233 52.4
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.3e-62 243.0 218 59.6
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 3.0e-62 242.7 230 58.3
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 3.9e-62 242.3 237 52.7
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 7.3e-61 238.0 164 67.7
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 2.1e-60 236.5 190 60.0
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 6.2e-60 235.0 242 53.3
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.2e-57 226.5 228 55.7
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.4e-57 224.9 218 51.4
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 6.4e-57 224.9 241 54.4
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-56 223.4 214 50.9
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.9e-56 223.4 194 61.9
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-55 220.7 189 57.7
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.0e-55 218.4 201 56.2
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 1.3e-54 217.2 215 49.8
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.7e-54 216.9 172 61.6
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 9.5e-53 211.1 203 55.2
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 3.1e-51 206.1 142 70.4
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.4e-50 202.6 196 50.5
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 2.9e-49 199.5 129 72.9
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 8.4e-49 198.0 187 55.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.2e-48 196.1 172 58.7
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.5e-45 187.2 166 54.8
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 3.4e-42 176.0 107 77.6
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 3.0e-38 162.9 219 40.6
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.0e-35 152.5 104 67.3
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 7.6e-34 148.3 106 68.9
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 7.6e-34 148.3 106 64.2
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.4e-32 144.1 103 65.0
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.9e-29 133.7 100 63.0
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 4.0e-27 125.9 225 37.8
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.1e-24 115.2 156 42.9
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.8e-20 103.2 179 34.1
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 6.2e-20 102.1 101 47.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.2e-16 89.4 69 60.9
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.1e-13 81.3 374 23.3
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.2e-12 77.0 52 61.5
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.4e-11 73.6 72 51.4
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-10 71.2 82 41.5
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 3.8e-09 66.2 65 53.8
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.2e-08 62.0 43 62.8


User provided reference genes

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