Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 1.4e-78 296.2 150 100.0
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 3.6e-58 228.4 150 85.3
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.8e-57 226.1 149 83.2
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.1e-54 216.9 149 81.9
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 4.1e-54 214.9 146 80.1
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 7.6e-48 194.1 152 73.7
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 7.6e-48 194.1 152 73.7
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 2.4e-46 189.1 154 72.7
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 7.8e-45 184.1 130 77.7
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 3.9e-44 181.8 154 69.5
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.5e-43 179.9 154 69.5
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 7.3e-43 177.6 155 65.2
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 2.8e-42 175.6 145 65.5
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 4.8e-42 174.9 154 68.8
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 6.2e-42 174.5 145 64.8
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 1.8e-41 172.9 146 65.1
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.8e-41 172.9 149 65.8
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 2.4e-41 172.6 145 64.1
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 4.0e-41 171.8 145 63.4
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 6.9e-41 171.0 146 65.8
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 9.0e-41 170.6 135 65.9
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 1.2e-40 170.2 149 63.1
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 2.0e-40 169.5 151 63.6
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 2.6e-40 169.1 145 61.4
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.4e-40 168.7 145 62.8
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 3.4e-40 168.7 146 62.3
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 4.5e-40 168.3 138 66.7
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 4.5e-40 168.3 145 65.5
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 9.9e-40 167.2 147 66.0
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 9.9e-40 167.2 146 62.3
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 9.9e-40 167.2 146 62.3
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.3e-39 166.8 145 64.8
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 1.7e-39 166.4 149 64.4
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 2.2e-39 166.0 147 61.2
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 6.4e-39 164.5 129 74.4
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 6.4e-39 164.5 145 61.4
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 8.4e-39 164.1 132 64.4
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.9e-38 162.9 149 63.1
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.4e-38 162.5 146 61.0
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 7.1e-38 161.0 145 62.1
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 9.3e-38 160.6 146 58.9
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 9.3e-38 160.6 146 58.9
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 1.6e-37 159.8 132 65.2
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.1e-37 159.5 146 58.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 3.5e-37 158.7 126 66.7
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.6e-37 158.3 148 61.5
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.3e-36 156.0 145 61.4
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 2.3e-36 156.0 147 59.2
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.3e-36 156.0 147 60.5
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 3.9e-36 155.2 148 57.4
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 5.1e-36 154.8 138 60.1
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 6.7e-36 154.5 147 58.5
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.7e-36 154.1 132 63.6
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-35 153.7 146 58.9
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-35 153.7 146 58.9
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 1.5e-35 153.3 143 59.4
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 2.5e-35 152.5 146 59.6
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 2.5e-35 152.5 147 57.1
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 3.3e-35 152.1 147 59.2
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 3.3e-35 152.1 136 61.8
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 4.3e-35 151.8 130 64.6
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 4.3e-35 151.8 146 56.8
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 9.6e-35 150.6 148 60.1
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 9.6e-35 150.6 145 58.6
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 1.6e-34 149.8 148 57.4
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 2.1e-34 149.4 135 61.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 2.8e-34 149.1 147 57.8
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.7e-34 148.7 135 62.2
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 4.8e-34 148.3 133 63.2
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 8.1e-34 147.5 134 60.4
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 8.1e-34 147.5 148 57.4
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.1e-33 147.1 148 57.4
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.8e-33 146.4 94 83.0
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 2.4e-33 146.0 148 56.8
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 4.0e-33 145.2 148 56.8
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 6.9e-33 144.4 148 58.1
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 9.0e-33 144.1 132 60.6
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.2e-32 143.7 133 58.6
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 1.2e-32 143.7 150 58.7
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.2e-32 143.7 145 57.9
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 2.0e-32 142.9 135 62.2
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 2.0e-32 142.9 150 54.0
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.6e-32 142.5 150 56.0
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 2.6e-32 142.5 133 59.4
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 4.5e-32 141.7 145 58.6
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 4.5e-32 141.7 147 55.8
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 4.5e-32 141.7 133 59.4
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 4.5e-32 141.7 146 56.2
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 2.2e-31 139.4 147 57.1
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.2e-31 139.4 134 59.0
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 2.9e-31 139.0 147 55.1
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.9e-31 138.3 150 54.7
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 6.4e-31 137.9 144 57.6
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 6.4e-31 137.9 148 55.4
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 6.4e-31 137.9 133 55.6
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.4e-30 136.7 135 54.1
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.9e-30 136.3 146 54.8
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.4e-30 136.0 147 55.8
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 2.4e-30 136.0 129 59.7
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 2.4e-30 136.0 147 54.4
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 3.2e-30 135.6 145 57.2
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 7.1e-30 134.4 145 56.6
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.2e-29 133.7 146 53.4
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.6e-29 133.3 146 55.5
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 6.0e-29 131.3 134 56.7
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 1.0e-28 130.6 145 51.7
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.3e-28 130.2 146 54.1
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.8e-28 129.8 142 50.7
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 6.7e-28 127.9 135 51.1
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.5e-27 126.7 138 55.1
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 3.3e-27 125.6 107 73.8
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 3.7e-26 122.1 94 68.1
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 3.7e-26 122.1 126 54.8
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.8e-26 121.7 107 72.0
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 4.0e-25 118.6 136 53.7
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 3.4e-24 115.5 135 51.1
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 3.8e-23 112.1 125 55.2
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 8.4e-23 110.9 127 48.0
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 7.1e-22 107.8 93 62.4
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 9.3e-22 107.5 116 50.9
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 5.1e-20 101.7 135 46.7
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 5.1e-20 101.7 135 45.9
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 8.7e-20 100.9 137 43.8
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 1.0e-15 87.4 142 43.0
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 3.8e-15 85.5 98 55.1
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 5.5e-14 81.6 132 43.9
BolC9t57846H Brassica oleracea HOM05D005924 ORTHO05D007290 5.1e-12 75.1 66 71.2
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 8.8e-12 74.3 105 42.9
C09p49940 Brassica napus HOM05D002024 ORTHO05D007288 1.9e-11 73.2 66 69.7
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.7e-10 70.1 51 70.6
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 1.8e-09 66.6 99 41.4
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 5.0e-07 58.5 80 45.0
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 3.2e-06 55.8 131 34.4
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 4.2e-06 55.5 57 49.1


User provided reference genes

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