Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G55570 Arabidopsis thaliana HOM05D007550 ORTHO05D009474 1.5e-72 276.2 144 100.0
AL8G31140 Arabidopsis lyrata HOM05D007550 ORTHO05D009474 2.6e-61 238.8 149 85.9
Thhalv10014968m.g Eutrema salsugineum HOM05D007550 ORTHO05D009474 1.2e-55 219.9 139 80.6
CARHR268880 Cardamine hirsuta HOM05D007550 ORTHO05D009474 2.8e-55 218.8 140 82.1
A10p12800 Brassica napus HOM05D007550 ORTHO05D009474 2.6e-53 212.2 139 78.4
BraA10t43373Z Brassica rapa HOM05D007550 ORTHO05D009474 2.6e-53 212.2 139 78.4
Aa31LG3G11520 Aethionema arabicum HOM05D007550 ORTHO05D009474 1.4e-51 206.5 146 72.6
BolC9t57498H Brassica oleracea HOM05D007550 ORTHO05D009474 1.2e-50 203.4 139 75.5
C09p46340 Brassica napus HOM05D007550 ORTHO05D009474 1.6e-50 203.0 139 75.5
Carub.0008s1594 Capsella rubella HOM05D007550 ORTHO05D009474 1.8e-46 189.5 133 76.7
BcaB08g35917 Brassica carinata HOM05D007550 ORTHO05D009474 2.2e-44 182.6 142 71.8
THA.LOC104817699 Tarenaya hassleriana HOM05D007550 ORTHO05D009474 3.7e-44 181.8 147 64.6
Psat2g008720 Pisum sativum HOM05D007550 ORTHO05D009474 5.1e-33 144.8 143 52.4
Medtr5g094600 Medicago truncatula HOM05D007550 ORTHO05D009474 5.6e-32 141.4 141 53.2
Atru.chr2.3607 Acer truncatum HOM05D007550 ORTHO05D009474 9.5e-32 140.6 93 66.7
QL08p005510 Quercus lobata HOM05D007550 ORTHO05D009474 2.8e-31 139.0 132 52.3
TWI38G1227 Tripterygium wilfordii HOM05D007550 ORTHO05D009474 2.8e-31 139.0 95 70.5
Duzib213G0332 Durio zibethinus HOM05D007550 ORTHO05D009474 3.6e-31 138.7 145 50.3
Sabra02G0058600 Salix brachista HOM05D007550 ORTHO05D009474 3.6e-31 138.7 135 51.1
MELO3C014132.2 Cucumis melo HOM05D007550 ORTHO05D009474 4.7e-31 138.3 95 65.3
CDE06G2160 Ceratophyllum demersum HOM05D007550 ORTHO05D009474 6.2e-31 137.9 97 67.0
Manes.15G063300 Manihot esculenta HOM05D007550 ORTHO05D009474 6.2e-31 137.9 87 69.0
Actinidia39070 Actinidia chinensis HOM05D007550 ORTHO05D009474 1.1e-30 137.1 129 53.5
Sc18g0004240 Simmondsia chinensis HOM05D007550 ORTHO05D009474 1.1e-30 137.1 145 49.7
Thecc.07G022400 Theobroma cacao HOM05D007550 ORTHO05D009474 1.8e-30 136.3 144 50.7
Sp6g17490 Schrenkiella parvula HOM05D007550 ORTHO05D009474 2.4e-30 136.0 134 60.4
Dinv10312 Davidia involucrata HOM05D007550 ORTHO05D009474 5.2e-30 134.8 96 61.5
LjContig00272g0022958 Lotus japonicus HOM05D007550 ORTHO05D009474 6.8e-30 134.4 145 51.7
GSVIVG01037778001 Vitis vinifera HOM05D007550 ORTHO05D009474 6.8e-30 134.4 95 62.1
Gorai.002G096500 Gossypium raimondii HOM05D007550 ORTHO05D009474 1.2e-29 133.7 139 49.6
ATR1149G080 Amborella trichopoda HOM05D007550 ORTHO05D009474 1.5e-29 133.3 73 78.1
CsaV3_3G004390 Cucumis sativus L. HOM05D007550 ORTHO05D009474 2.0e-29 132.9 95 64.2
FAN11G2859 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.0e-29 132.9 97 59.8
RcHm_v2.0_Chr5g0042631 Rosa chinensis HOM05D007550 ORTHO05D009474 2.0e-29 132.9 97 58.8
Phvul.008G275600 Phaseolus vulgaris HOM05D007550 ORTHO05D009474 3.4e-29 132.1 148 50.7
CiPaw.12G135900 Carya illinoinensis HOM05D007550 ORTHO05D009474 4.4e-29 131.7 97 61.9
FvH4_3g24050 Fragaria vesca HOM05D007550 ORTHO05D009474 4.4e-29 131.7 97 59.8
Lj1A885G31 Lonicera japonica HOM05D007550 ORTHO05D009474 5.8e-29 131.3 142 48.6
ECA240G1453 Erigeron canadensis HOM05D007550 ORTHO05D009474 9.9e-29 130.6 86 62.8
Sed0001315 Sechium edule HOM05D007550 ORTHO05D009474 9.9e-29 130.6 96 61.5
HanXRQChr13g0408011 Helianthus annuus HOM05D007550 ORTHO05D009474 1.3e-28 130.2 83 66.3
Hma1.2p1_0036F.1_g022730 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 1.7e-28 129.8 86 67.4
Nn1g07439 Nelumbo nucifera HOM05D007550 ORTHO05D009474 1.7e-28 129.8 77 70.1
Peaxi162Scf00955g00219 Petunia axillaris HOM05D007550 ORTHO05D009474 1.7e-28 129.8 96 56.2
FAN16G0277 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.2e-28 129.4 93 60.2
Gohir.A01G087300 Gossypium hirsutum HOM05D007550 ORTHO05D009474 2.9e-28 129.0 97 61.9
Migut.M01677 Erythranthe guttata HOM05D007550 ORTHO05D009474 8.4e-28 127.5 120 50.8
Lalb_Chr17g0348791 Lupinus albus HOM05D007550 ORTHO05D009474 8.4e-28 127.5 93 62.4
TAR626G1551 Trochodendron aralioides HOM05D007550 ORTHO05D009474 1.9e-27 126.3 74 70.3
PGSC0003DMG400029800 Solanum tuberosum HOM05D007550 ORTHO05D009474 2.4e-27 125.9 115 52.2
Nitab4.5_0000163g0330 Nicotiana tabacum HOM05D007550 ORTHO05D009474 3.2e-27 125.6 80 66.2
Solyc12g015630.2 Solanum lycopersicum HOM05D007550 ORTHO05D009474 3.2e-27 125.6 116 52.6
Nitab4.5_0001750g0040 Nicotiana tabacum HOM05D007550 ORTHO05D009474 4.1e-27 125.2 94 57.4
MD11G1204800 Malus domestica HOM05D007550 ORTHO05D009474 5.4e-27 124.8 70 77.1
Cc05_g14670 Coffea canephora HOM05D007550 ORTHO05D009474 7.1e-27 124.4 88 61.4
COL.COLO4_09786 Corchorus olitorius HOM05D007550 ORTHO05D009474 7.1e-27 124.4 99 58.6
DCAR_022604 Daucus carota HOM05D007550 ORTHO05D009474 2.7e-26 122.5 96 60.4
Os01g0762300 Oryza sativa ssp. japonica HOM05D007550 ORTHO05D009474 3.5e-26 122.1 71 74.6
MSTRG.6984 Avicennia marina HOM05D007550 ORTHO05D009474 4.6e-26 121.7 102 55.9
Zm00001eb370450 Zea mays HOM05D007550 ORTHO05D009474 4.6e-26 121.7 71 71.8
CAN.G410.43 Capsicum annuum HOM05D007550 ORTHO05D009474 6.0e-26 121.3 91 58.2
arahy.Tifrunner.gnm1.ann1.R7ZLS4 Arachis hypogaea HOM05D007550 ORTHO05D009474 7.8e-26 120.9 93 62.4
arahy.Tifrunner.gnm1.ann1.S0MYI4 Arachis hypogaea HOM05D007550 ORTHO05D009474 1.0e-25 120.6 92 63.0
Sopen12g007530 Solanum pennellii HOM05D007550 ORTHO05D009474 2.3e-25 119.4 116 51.7
HPP92_028367 Vanilla planifolia HOM05D007550 ORTHO05D009474 2.3e-25 119.4 116 46.6
Mapoly0128s0022 Marchantia polymorpha HOM05D007550 ORTHO05D009474 3.9e-25 118.6 99 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2781 Anthoceros agrestis HOM05D007550 ORTHO05D009474 3.6e-23 112.1 92 54.3
Ciclev10009869m.g Citrus clementina HOM05D007550 ORTHO05D009474 3.6e-23 112.1 133 49.6
Potri.011G085501 Populus trichocarpa HOM05D007550 ORTHO05D009474 8.1e-23 110.9 86 61.6
VMungo0647G1572 Vigna mungo HOM05D007550 ORTHO05D009474 2.4e-22 109.4 78 62.8
CBR_g30607 Chara braunii HOM05D007550 ORTHO05D009474 4.0e-22 108.6 82 56.1
ClCG10G004590 Citrullus lanatus HOM05D007550 ORTHO05D009474 5.2e-22 108.2 99 56.6
Oeu005969.1 Olea europaea HOM05D007550 ORTHO05D009474 1.3e-20 103.6 86 54.7
PSO541G5298 Papaver somniferum HOM05D007550 ORTHO05D009474 2.9e-20 102.4 73 63.0
PSO675G9283 Papaver somniferum HOM05D007550 ORTHO05D009474 2.9e-20 102.4 73 63.0
Cfa020230 Carpinus fangiana HOM05D007550 ORTHO05D009474 6.4e-20 101.3 108 49.1
FAN21G0016 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.1e-19 100.5 85 52.9
PGR031G0516 Punica granatum HOM05D007550 ORTHO05D009474 2.4e-19 99.4 62 67.7
Glyma.14G015900 Glycine max HOM05D007550 ORTHO05D009474 3.2e-19 99.0 136 44.9
Gohir.D01G073600 Gossypium hirsutum HOM05D007550 ORTHO05D009474 3.2e-19 99.0 124 44.4
Aqoxy4G02213 Aquilegia oxysepala HOM05D007550 ORTHO05D009474 1.6e-18 96.7 67 61.2
FAN25G3253 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.1e-18 96.3 85 50.6
FAN25G1734 Fragaria x ananassa HOM05D007550 ORTHO05D009474 6.0e-18 94.7 85 49.4
Hma1.2p1_0036F.1_g022720 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 1.7e-17 93.2 100 50.0
EL10Ac4g07615 Beta vulgaris HOM05D007550 ORTHO05D009474 1.9e-16 89.7 86 45.3
unitig_899.g15275 Utricularia gibba HOM05D007550 ORTHO05D009474 5.6e-16 88.2 75 54.7
PRCOL_00004706 Prasinoderma coloniale HOM05D007550 ORTHO05D009474 1.6e-15 86.7 154 35.7
Cre03.g145567 Chlamydomonas reinhardtii HOM05D007550 ORTHO05D009474 2.8e-15 85.9 71 50.7
Pp3c18_5680 Physcomitrium patens HOM05D007550 ORTHO05D009474 2.4e-14 82.8 76 51.3
CANSAT56G0742 Cannabis sativa HOM05D007550 ORTHO05D009474 4.5e-13 78.6 70 51.4
SGA_v2.0_scaffold168G38530 Striga asiatica HOM05D007550 ORTHO05D009474 4.5e-13 78.6 54 63.0
vmacro09669 Vaccinium macrocarpon HOM05D007550 ORTHO05D009474 1.9e-08 63.2 58 48.3
Potri.011G085700 Populus trichocarpa HOM05D007550 ORTHO05D009474 7.4e-08 61.2 58 55.2
Ah.06g181190 Amaranthus hybridus HOM05D000063 ORTHO05D000906 9.6e-08 60.8 54 53.7
MBI16_g11565_MAGBIO Magnolia biondii HOM05D007550 ORTHO05D009474 1.8e-06 56.6 52 59.6
Hund01919 Selenicereus undatus HOM05D007550 ORTHO05D009474 4.0e-06 55.5 47 46.8


User provided reference genes

Program Settings