Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 0.0e+00 1095.9 535 100.0
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.6e-295 1016.1 540 93.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 8.4e-283 976.5 543 89.0
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 4.0e-277 957.6 547 87.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.2e-276 956.1 539 87.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.0e-276 955.3 536 87.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.8e-269 932.2 539 85.5
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-262 909.4 540 84.4
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-261 906.4 538 84.2
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.9e-259 898.3 540 83.7
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 3.4e-252 874.8 537 80.3
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 6.7e-248 860.5 539 81.6
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.8e-217 758.8 533 70.9
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 3.3e-194 682.2 550 63.1
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-192 677.2 448 76.3
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 9.9e-191 670.6 544 62.7
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.3e-190 670.2 537 61.1
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.9e-190 668.3 539 62.3
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.1e-189 665.2 545 62.2
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.7e-188 662.5 551 62.4
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.7e-188 662.5 537 61.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 6.0e-188 661.4 540 63.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 7.8e-188 661.0 545 61.5
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.0e-187 660.6 545 60.9
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.3e-187 660.2 537 61.5
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.0e-187 659.1 537 61.1
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.1e-187 658.3 536 61.6
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 6.6e-187 657.9 553 61.5
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 8.6e-187 657.5 535 62.4
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.1e-186 657.1 535 63.6
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.3e-186 655.6 536 61.2
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.3e-186 655.6 545 61.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 5.6e-186 654.8 550 62.5
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.3e-186 654.4 537 62.2
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.3e-186 654.4 537 62.2
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 9.5e-186 654.1 569 59.6
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.2e-185 653.7 561 59.7
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.1e-185 652.9 569 59.4
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.8e-185 652.5 548 60.2
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.6e-185 652.1 542 61.3
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.7e-185 651.7 546 60.1
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 8.1e-185 651.0 543 59.7
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 8.1e-185 651.0 538 61.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.4e-184 650.2 555 59.6
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.8e-184 649.8 539 61.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.8e-184 649.8 535 63.4
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.3e-184 649.4 545 60.2
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.3e-184 649.4 542 60.9
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.1e-184 649.0 546 60.6
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 6.8e-184 647.9 557 60.0
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.0e-183 646.4 543 60.6
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.4e-183 645.2 550 59.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 9.9e-183 644.0 557 59.4
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-182 643.7 537 61.6
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-182 643.7 537 61.6
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.3e-182 643.7 548 59.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.7e-182 643.3 561 59.4
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.7e-182 643.3 561 59.4
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.2e-182 642.9 548 60.6
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.4e-181 640.2 556 59.7
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.9e-181 639.8 537 60.9
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.4e-181 639.4 539 60.1
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.4e-181 639.4 545 58.9
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.4e-181 639.4 546 59.9
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.2e-180 637.1 556 59.0
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.5e-180 635.6 541 59.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-179 633.6 538 60.6
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.3e-179 633.6 539 60.7
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-179 633.3 538 60.4
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.9e-179 632.1 542 61.4
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 6.6e-179 631.3 544 59.7
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.5e-178 630.2 541 59.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.5e-178 630.2 549 59.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.5e-178 630.2 539 57.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 4.3e-178 628.6 562 56.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.3e-178 627.9 549 59.9
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.1e-176 624.0 542 57.6
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.4e-176 622.9 543 58.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.0e-176 622.1 539 59.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 5.2e-176 621.7 515 60.6
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 6.9e-176 621.3 548 58.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 6.9e-176 621.3 571 57.3
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 9.0e-176 620.9 522 60.0
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 5.8e-175 618.2 539 59.2
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 5.8e-175 618.2 539 58.3
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.4e-174 614.8 536 58.8
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 8.4e-174 614.4 542 58.3
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.7e-172 609.4 560 56.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.0e-171 607.4 560 58.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.5e-170 602.8 532 57.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.3e-170 602.1 552 59.1
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.6e-169 599.0 552 58.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 6.2e-169 598.2 529 57.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 6.2e-169 598.2 546 56.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.1e-168 597.4 535 58.5
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 7.6e-167 591.3 554 55.1
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.1e-165 587.4 539 57.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.8e-163 580.1 481 59.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.8e-163 580.1 536 55.4
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 6.7e-163 578.2 493 57.8
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.1e-162 577.4 540 57.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.0e-159 566.6 533 53.5
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.2e-158 563.1 513 53.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.9e-158 562.8 481 60.1
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 6.4e-158 561.6 441 63.9
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 7.1e-157 558.1 485 56.5
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 3.5e-156 555.8 548 54.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.0e-155 554.3 493 58.6
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-150 537.0 458 57.9
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 5.5e-149 531.9 420 63.3
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.1e-148 530.0 466 59.9
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.2e-141 505.0 412 61.2
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.6e-140 503.8 523 52.4
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.4e-136 490.0 554 54.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 7.9e-132 474.9 303 75.2
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.8e-131 473.8 323 70.0
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.6e-130 469.9 323 69.7
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.1e-124 450.3 315 68.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 8.0e-124 448.4 324 65.4
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.5e-114 417.5 300 66.0
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.7e-113 412.9 543 40.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.6e-111 407.5 412 52.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.1e-109 401.4 533 41.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 6.8e-107 392.1 361 60.9
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.1e-104 383.3 433 46.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 7.0e-96 355.5 253 67.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 9.2e-96 355.1 258 68.2
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.3e-94 350.5 250 68.0
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 5.0e-94 349.4 288 67.0
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.2e-81 307.4 264 65.2
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-80 304.7 264 64.8
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.6e-79 299.7 329 50.5
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-77 295.0 209 67.0
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 3.4e-74 283.5 211 65.9
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 8.3e-73 278.9 227 60.4
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 3.3e-69 266.9 197 71.1
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 4.0e-59 233.4 155 69.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 4.0e-59 233.4 155 69.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.4e-58 230.3 124 82.3
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.3e-57 228.4 178 66.9
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-48 196.4 465 29.7
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.1e-47 194.5 236 47.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.8e-46 191.4 106 78.3
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 7.4e-45 186.0 203 46.3
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.6e-36 158.3 101 75.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-35 155.6 76 90.8
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.1e-35 155.6 76 90.8
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.1e-35 155.6 303 34.0
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.5e-34 151.8 190 45.8
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 8.4e-33 146.0 285 35.1
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-32 145.6 85 75.3
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 7.1e-32 142.9 176 46.0
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.7e-31 141.0 181 44.2
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.7e-31 141.0 109 67.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 6.0e-31 139.8 274 34.7
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 8.7e-30 136.0 181 46.4
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.8e-28 130.2 98 63.3
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.4e-27 127.9 92 59.8
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 5.9e-26 123.2 72 84.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.3e-22 111.3 95 60.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-21 107.1 59 78.0
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 5.3e-11 73.6 51 66.7
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 5.3e-11 73.6 51 66.7
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.5e-10 72.0 105 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.5e-10 70.9 216 28.7
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 2.5e-08 64.7 62 54.8
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.7e-07 61.2 34 88.2


User provided reference genes

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