Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.0e-54 216.5 110 100.0
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 5.2e-54 214.2 110 98.2
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 2.8e-52 208.4 110 96.4
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 8.3e-52 206.8 110 96.4
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 4.1e-51 204.5 110 94.5
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 4.5e-50 201.1 110 93.6
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.9e-50 200.7 110 92.7
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 5.9e-50 200.7 110 92.7
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.9e-50 200.7 110 92.7
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 1.3e-49 199.5 110 92.7
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-49 199.1 110 91.8
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 2.3e-49 198.7 110 92.7
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 3.8e-49 198.0 110 91.8
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.8e-49 198.0 110 91.8
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 91.9
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 91.9
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 91.9
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.9e-48 195.7 110 91.8
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 2.3e-46 188.7 111 87.4
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 7.8e-42 173.7 111 78.4
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 9.5e-40 166.8 103 79.6
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 3.4e-37 158.3 101 74.3
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 9.8e-37 156.8 100 77.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.7e-36 156.0 111 69.4
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.2e-36 155.6 107 72.0
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 2.4e-35 152.1 110 69.1
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 67.3
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 2.4e-35 152.1 105 72.4
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.2e-35 151.8 100 75.0
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 3.2e-35 151.8 107 66.4
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 4.1e-35 151.4 81 92.6
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 4.1e-35 151.4 106 67.9
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 70.1
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 7.0e-35 150.6 107 66.4
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 9.2e-35 150.2 108 68.5
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 9.2e-35 150.2 107 68.2
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.2e-34 149.8 108 66.7
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.2e-34 149.8 108 68.5
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.2e-34 149.8 107 69.2
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 66.7
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.6e-34 149.4 100 80.0
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 67.3
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 67.6
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.1e-34 149.1 103 68.0
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.1e-34 149.1 107 68.2
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.7e-34 148.7 107 66.4
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 3.5e-34 148.3 111 65.8
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 69.2
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.6e-34 147.9 106 66.0
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 6.0e-34 147.5 100 79.0
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 66.4
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 64.5
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.8e-34 147.1 106 64.2
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 7.8e-34 147.1 108 65.7
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.0e-33 146.7 83 91.6
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 66.4
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 66.4
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.0e-33 146.7 106 68.9
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 67.0
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 66.4
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 68.9
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.3e-33 146.4 108 66.7
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.7e-33 146.0 106 67.9
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.7e-33 146.0 107 64.5
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.3e-33 145.6 98 69.4
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.3e-33 145.6 106 67.0
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.3e-33 145.6 108 66.7
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.3e-33 145.6 101 67.3
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 2.3e-33 145.6 97 73.2
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 3.0e-33 145.2 106 67.0
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 3.0e-33 145.2 110 65.5
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 65.4
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.0e-33 145.2 106 66.0
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.0e-33 145.2 106 67.0
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 64.5
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.9e-33 144.8 106 67.0
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 3.9e-33 144.8 107 64.5
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.9e-33 144.8 107 66.4
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 5.0e-33 144.4 112 61.6
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 5.0e-33 144.4 102 64.7
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 6.6e-33 144.1 110 65.5
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 6.6e-33 144.1 108 64.8
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 6.6e-33 144.1 102 63.7
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 6.6e-33 144.1 105 68.6
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 6.6e-33 144.1 98 66.3
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 6.6e-33 144.1 102 64.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 8.6e-33 143.7 98 71.4
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 8.6e-33 143.7 106 66.0
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 8.6e-33 143.7 98 68.4
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 8.6e-33 143.7 110 63.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.6e-33 143.7 107 63.6
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.6e-33 143.7 107 63.6
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 8.6e-33 143.7 107 62.6
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 8.6e-33 143.7 106 62.3
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-32 143.3 107 61.7
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 67.3
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 61.7
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 61.7
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 61.7
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 61.7
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 61.7
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.5e-32 142.9 105 67.6
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.9e-32 142.5 98 66.3
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.9e-32 142.5 107 64.5
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.5e-32 142.1 107 63.6
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.5e-32 142.1 107 63.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.5e-32 142.1 98 66.3
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 3.3e-32 141.7 108 66.7
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 4.3e-32 141.4 107 63.6
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 7.3e-32 140.6 106 65.1
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 9.5e-32 140.2 110 61.8
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 9.5e-32 140.2 98 67.3
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.2e-31 139.8 102 62.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.2e-31 139.8 101 68.3
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.2e-31 139.8 107 62.6
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.6e-31 139.4 107 63.6
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-31 139.4 98 65.3
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-31 139.4 98 65.3
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.1e-31 139.0 106 62.3
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 2.8e-31 138.7 98 64.3
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.6e-31 138.3 98 66.3
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 4.7e-31 137.9 102 63.7
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 4.7e-31 137.9 110 60.0
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 4.7e-31 137.9 102 62.7
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 4.7e-31 137.9 98 64.3
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 4.7e-31 137.9 98 64.3
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 6.2e-31 137.5 107 65.4
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 6.2e-31 137.5 98 66.3
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 6.2e-31 137.5 98 66.3
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.1e-30 136.7 105 64.8
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.4e-30 136.3 105 63.8
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 8.9e-30 133.7 102 65.7
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.2e-29 133.3 102 63.7
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.2e-29 133.3 98 64.3
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 2.6e-29 132.1 107 59.8
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 2.6e-29 132.1 107 59.8
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 3.4e-29 131.7 98 63.3
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 2.2e-28 129.0 93 64.5
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.2e-27 123.6 95 62.1
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.5e-26 121.7 107 58.9
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 9.5e-24 113.6 98 59.2
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.1e-22 110.2 92 59.8
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.8e-22 109.4 85 62.4
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 4.0e-22 108.2 81 63.0
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 3.4e-21 105.1 85 63.5
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.2e-20 102.4 91 57.1
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-18 94.7 102 49.0
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 3.9e-17 91.7 66 62.1
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 8.7e-17 90.5 75 61.3
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.9e-16 89.4 85 56.5
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 6.9e-14 80.9 51 70.6
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.5e-13 79.7 65 55.4
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 3.2e-11 72.0 54 61.1
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 7.1e-11 70.9 88 43.2
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 9.3e-11 70.5 95 44.2
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 2.1e-10 69.3 54 63.0
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.1e-10 69.3 55 61.8
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.3e-09 65.9 75 46.7
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 2.3e-09 65.9 107 36.4
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 3.9e-09 65.1 54 53.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 3.6e-07 58.5 44 68.2
C03p16630 Brassica napus HOM05D004421 ORTHO05D005227 4.8e-07 58.2 83 43.4


User provided reference genes

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