Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.5e-223 779.2 395 100.0
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 2.9e-195 685.3 400 88.2
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.2e-169 600.1 404 79.7
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.5e-164 583.2 400 78.2
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.1e-162 577.0 397 78.8
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.8e-136 490.0 393 70.7
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 8.7e-136 487.6 397 70.3
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.4e-133 480.3 397 69.5
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 5.0e-131 471.9 391 68.8
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 5.0e-131 471.9 391 68.8
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 5.9e-124 448.4 281 83.6
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 3.2e-122 442.6 413 60.5
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 3.5e-108 396.0 417 55.2
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 3.8e-83 312.8 368 49.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.9e-82 310.5 437 45.1
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 7.3e-82 308.5 381 46.5
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 1.2e-81 307.8 367 48.2
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.9e-75 286.2 376 44.4
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 6.6e-75 285.4 376 44.4
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 2.5e-74 283.5 396 45.2
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.5e-74 283.5 376 44.9
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.5e-74 283.5 395 44.6
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.3e-74 283.1 432 42.4
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 3.3e-74 283.1 372 46.0
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 5.6e-74 282.3 383 46.5
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 9.5e-74 281.6 454 41.0
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.6e-73 280.8 440 42.0
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 1.6e-73 280.8 377 45.4
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 2.1e-73 280.4 425 42.1
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 2.8e-73 280.0 455 40.2
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 6.2e-73 278.9 420 44.5
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 8.0e-73 278.5 382 43.7
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.1e-72 278.1 368 45.7
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.8e-72 277.3 421 42.8
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 2.3e-72 276.9 426 43.2
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 8.9e-72 275.0 429 39.4
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.5e-71 274.2 388 42.8
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 4.4e-71 272.7 366 44.3
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.7e-70 270.8 377 45.1
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.2e-70 270.4 509 39.1
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.2e-70 270.4 454 40.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 2.9e-70 270.0 440 40.5
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 6.4e-70 268.9 415 41.2
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 8.3e-70 268.5 454 40.1
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.1e-69 268.1 358 43.6
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 2.4e-69 266.9 400 42.8
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 7.0e-69 265.4 379 44.1
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.6e-68 264.2 386 43.0
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 1.6e-68 264.2 377 43.8
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.7e-68 263.5 362 43.9
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 6.0e-68 262.3 360 43.9
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.3e-67 261.2 355 45.1
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.7e-67 260.8 385 43.4
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.7e-67 260.8 351 44.2
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 6.6e-67 258.8 359 42.3
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 8.6e-67 258.5 449 37.4
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 1.9e-66 257.3 359 42.1
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 3.3e-66 256.5 361 43.5
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.3e-66 256.5 350 44.3
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 3.3e-66 256.5 354 42.9
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 4.3e-66 256.1 150 86.0
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 5.6e-66 255.8 360 42.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 9.5e-66 255.0 361 42.9
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 1.6e-65 254.2 362 43.6
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.8e-65 253.4 375 41.6
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 4.7e-65 252.7 421 40.9
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.2e-65 252.3 382 42.4
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.1e-64 251.5 419 40.1
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 1.8e-64 250.8 366 42.6
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 5.2e-64 249.2 360 43.6
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 8.9e-64 248.4 380 40.0
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 2.6e-63 246.9 361 42.9
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 3.4e-63 246.5 423 40.0
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 3.4e-63 246.5 375 42.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 4.4e-63 246.1 365 41.6
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 5.8e-63 245.7 378 41.8
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.3e-62 244.6 354 41.8
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.7e-62 244.2 419 38.4
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 4.9e-62 242.7 452 36.5
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.1e-61 241.5 372 40.9
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.3e-59 234.6 363 41.0
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.5e-58 231.1 357 40.3
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-57 228.0 360 42.8
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.6e-57 226.5 365 40.5
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.1e-57 225.3 337 42.4
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.2e-55 221.5 372 37.9
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.5e-55 221.1 352 38.6
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.6e-55 220.3 372 37.9
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.7e-54 217.6 362 39.8
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.6e-52 211.1 359 37.3
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.8e-49 200.3 484 32.2
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 4.7e-49 199.5 486 31.5
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 6.2e-49 199.1 404 34.2
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.4e-47 193.4 369 38.5
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 9.9e-47 191.8 565 29.7
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 8.4e-46 188.7 190 54.7
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.4e-45 188.0 196 51.5
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-43 181.4 302 41.7
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 1.9e-42 177.6 186 54.8
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.9e-42 177.6 199 49.7
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.3e-41 174.9 192 50.0
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.2e-41 172.6 310 38.4
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.3e-38 164.9 353 34.3
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 4.9e-38 162.9 157 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 2.8e-33 147.1 353 32.9
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.4e-29 134.8 307 30.0
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 2.7e-28 130.6 341 31.7
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.8e-27 127.9 256 35.2
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 2.5e-26 124.0 365 28.5
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.3e-26 123.2 102 59.8
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 4.5e-23 113.2 78 70.5
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.2e-20 105.1 342 27.5
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 6.1e-20 102.8 91 51.6
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 1.1e-18 98.6 83 56.6
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.6e-17 94.7 88 54.5
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.4e-16 91.7 188 31.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.4e-16 91.7 81 50.6
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-14 84.7 76 48.7
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 2.5e-13 80.9 87 50.6
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.3e-11 74.3 51 68.6
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 8.5e-06 55.8 99 30.3


User provided reference genes

Program Settings