Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 6.6e-79 297.7 203 100.0
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 3.1e-76 288.9 203 98.0
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 3.1e-60 235.7 203 77.3
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 6.8e-60 234.6 203 76.8
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 1.5e-59 233.4 203 76.8
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 1.5e-59 233.4 203 76.8
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 4.9e-58 228.4 208 80.3
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 4.9e-58 228.4 203 76.8
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 2.4e-57 226.1 203 72.9
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 1.2e-56 223.8 203 73.4
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 7.8e-56 221.1 206 69.4
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 9.6e-54 214.2 201 70.1
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 2.7e-48 196.1 200 58.5
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 1.3e-34 150.6 204 52.0
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 4.6e-32 142.1 214 44.9
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 6.7e-31 138.3 215 45.1
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.9e-30 136.7 215 44.7
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 4.3e-30 135.6 213 44.6
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 4.3e-30 135.6 215 44.2
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 4.3e-30 135.6 212 44.8
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 7.4e-30 134.8 213 43.2
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 1.3e-29 134.0 213 43.7
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 2.8e-29 132.9 208 43.8
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 3.7e-29 132.5 213 44.1
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 4.8e-29 132.1 212 43.4
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 8.2e-29 131.3 209 42.6
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 8.2e-29 131.3 210 44.8
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.8e-28 130.2 215 43.3
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 1.8e-28 130.2 214 42.1
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 1.8e-28 130.2 212 43.4
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 4.1e-28 129.0 208 42.8
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 9.0e-28 127.9 212 41.0
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 1.2e-27 127.5 211 41.2
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 1.5e-27 127.1 214 40.2
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 2.0e-27 126.7 208 44.7
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 4.5e-27 125.6 214 43.0
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 5.9e-27 125.2 215 41.4
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 5.9e-27 125.2 214 45.3
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 7.6e-27 124.8 214 43.0
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 7.6e-27 124.8 214 43.0
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 1.0e-26 124.4 214 40.2
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 1.3e-26 124.0 221 39.8
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 1.3e-26 124.0 211 40.3
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.7e-26 123.6 206 40.8
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 2.2e-26 123.2 215 40.9
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.2e-26 123.2 211 41.7
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.2e-26 123.2 211 41.7
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 2.2e-26 123.2 209 41.6
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 2.9e-26 122.9 215 41.9
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.9e-26 122.9 206 40.8
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 5.0e-26 122.1 209 40.2
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 5.0e-26 122.1 223 39.5
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 6.5e-26 121.7 214 42.1
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 8.4e-26 121.3 213 40.8
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 8.4e-26 121.3 213 41.8
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 1.1e-25 120.9 213 39.4
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.4e-25 120.6 215 40.9
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.4e-25 120.6 213 41.3
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.9e-25 120.2 206 39.8
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 2.5e-25 119.8 209 40.7
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 3.2e-25 119.4 220 39.5
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.5e-25 118.6 215 42.3
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 2.1e-24 116.7 207 40.1
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 4.6e-24 115.5 205 40.0
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 1.0e-23 114.4 211 41.2
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 1.0e-23 114.4 220 37.3
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 1.5e-22 110.5 214 37.4
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.5e-22 110.5 210 38.1
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 4.3e-22 109.0 215 37.2
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 5.7e-22 108.6 215 37.7
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 5.7e-22 108.6 209 37.8
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.3e-21 107.5 211 38.4
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.7e-21 105.9 211 38.9
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 4.8e-21 105.5 209 37.3
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 4.8e-21 105.5 211 38.9
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 2.4e-20 103.2 212 36.8
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.4e-20 103.2 211 37.9
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 4.1e-20 102.4 207 36.2
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 9.0e-20 101.3 207 38.6
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 2.0e-19 100.1 211 36.5
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 5.9e-19 98.6 204 45.1
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 1.0e-18 97.8 220 36.8
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 1.0e-18 97.8 212 37.3
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.0e-18 97.8 213 36.2
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 1.3e-18 97.4 222 34.2
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 3.8e-18 95.9 207 35.3
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 5.0e-18 95.5 203 36.9
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 5.0e-18 95.5 211 36.0
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 8.5e-18 94.7 208 38.5
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.9e-17 93.6 214 35.5
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 1.9e-17 93.6 210 34.8
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 2.5e-17 93.2 212 33.0
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 7.2e-17 91.7 214 33.2
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 7.2e-17 91.7 214 35.0
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 9.4e-17 91.3 198 36.4
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 9.4e-17 91.3 211 37.9
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 1.6e-16 90.5 212 34.0
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 1.6e-16 90.5 214 35.0
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 3.6e-16 89.4 211 35.5
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 4.6e-16 89.0 221 33.5
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 7.9e-16 88.2 206 31.6
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 1.4e-15 87.4 217 34.6
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.4e-15 87.4 211 35.1
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 3.0e-15 86.3 211 35.1
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 3.9e-15 85.9 196 33.2
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 8.8e-15 84.7 208 31.7
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 1.5e-14 84.0 217 30.4
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.7e-13 80.5 207 34.8
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 1.7e-13 80.5 112 48.2
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.8e-13 79.7 208 34.6
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 6.3e-13 78.6 205 31.7
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 8.2e-13 78.2 206 31.6
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.4e-12 77.4 222 30.6
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 4.1e-12 75.9 203 34.0
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 1.2e-11 74.3 200 32.5
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 5.9e-11 72.0 215 30.7
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 1.0e-10 71.2 192 29.2
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 1.3e-10 70.9 206 31.6
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 1.7e-10 70.5 110 45.5
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 2.9e-10 69.7 200 33.5
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 5.0e-10 68.9 202 32.2
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.4e-09 67.4 216 30.1
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 2.5e-09 66.6 200 30.0
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.2e-08 64.3 194 32.5
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 2.1e-08 63.5 213 30.0
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 1.0e-07 61.2 209 29.7
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 3.9e-07 59.3 34 70.6
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 8.8e-07 58.2 187 27.8
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.5e-06 57.4 194 29.4


User provided reference genes

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