Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 5.7e-156 554.3 298 100.0
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.3e-147 526.6 299 95.7
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.3e-128 462.6 304 84.9
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 8.6e-128 460.7 301 85.7
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 2.3e-112 409.5 305 76.7
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 9.6e-111 404.1 311 74.3
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.1e-98 364.0 306 69.9
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 3.2e-98 362.5 304 70.1
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 4.6e-97 358.6 308 69.5
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 2.5e-95 352.8 304 68.1
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 2.1e-94 349.7 304 68.1
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.4e-93 347.1 304 67.8
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 6.9e-93 344.7 307 68.4
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 1.3e-91 340.5 317 64.4
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 5.5e-90 335.1 308 66.2
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.2e-81 307.4 323 62.8
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 2.2e-75 286.6 294 60.9
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 3.0e-72 276.2 325 55.4
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 2.4e-37 160.2 343 39.9
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 9.2e-37 158.3 337 38.9
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 5.0e-35 152.5 313 38.3
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 5.0e-35 152.5 336 40.5
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 6.6e-35 152.1 335 38.8
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 2.5e-34 150.2 332 38.9
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 7.3e-34 148.7 313 36.7
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.8e-33 146.7 315 36.5
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 2.8e-33 146.7 328 37.8
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 2.8e-33 146.7 341 37.0
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 4.7e-33 146.0 314 36.6
BolC2t07792H Brassica oleracea HOM05D003841 ORTHO05D004602 4.7e-33 146.0 263 40.7
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 4.7e-33 146.0 313 36.4
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.8e-32 144.1 326 36.8
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.3e-32 143.7 355 34.6
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 4.0e-32 142.9 334 36.2
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 6.8e-32 142.1 322 37.0
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 8.9e-32 141.7 330 37.9
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 8.9e-32 141.7 325 36.3
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.2e-31 141.4 341 37.2
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.5e-31 141.0 331 36.3
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.6e-31 140.2 322 36.6
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 7.5e-31 138.7 324 37.3
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 9.8e-31 138.3 347 36.3
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.3e-30 137.9 327 35.5
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.2e-30 137.1 326 35.0
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 4.9e-30 136.0 335 35.2
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.9e-30 136.0 318 36.5
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.9e-30 136.0 347 35.2
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 6.4e-30 135.6 325 34.5
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 6.4e-30 135.6 328 33.2
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.1e-29 134.8 324 35.2
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-29 134.8 325 34.2
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.4e-29 134.4 330 33.6
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.4e-29 133.7 343 34.7
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 2.4e-29 133.7 330 35.2
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 4.1e-29 132.9 293 38.9
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 4.1e-29 132.9 321 34.0
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 7.0e-29 132.1 340 37.9
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-28 131.3 340 36.5
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 1.6e-28 131.0 313 35.1
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 2.0e-28 130.6 328 35.4
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 3.5e-28 129.8 330 37.0
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 5.9e-28 129.0 321 35.2
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 5.9e-28 129.0 343 35.3
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.9e-28 129.0 350 33.4
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 7.8e-28 128.6 313 34.8
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.7e-27 127.5 319 34.2
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.7e-27 127.5 332 35.8
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.7e-27 127.5 353 33.4
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.3e-27 127.1 344 32.8
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 3.0e-27 126.7 335 34.3
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 3.0e-27 126.7 324 34.9
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 5.0e-27 125.9 322 34.8
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 2.5e-26 123.6 326 33.7
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 3.3e-26 123.2 327 33.9
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.3e-26 123.2 350 32.0
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 5.6e-26 122.5 310 33.5
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 5.6e-26 122.5 315 33.0
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 5.6e-26 122.5 219 44.3
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 7.3e-26 122.1 323 34.4
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 7.3e-26 122.1 310 33.2
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.6e-25 120.9 319 36.1
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.6e-25 120.9 328 35.1
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.1e-25 120.6 331 35.3
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 2.1e-25 120.6 342 32.2
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 2.1e-25 120.6 321 34.9
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.8e-25 120.2 329 34.7
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.8e-25 120.2 329 34.7
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 2.8e-25 120.2 324 34.3
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 4.7e-25 119.4 315 34.9
BcaC03g14305 Brassica carinata HOM05D003841 ORTHO05D004602 6.2e-25 119.0 239 38.9
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 8.0e-25 118.6 321 34.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.0e-25 118.6 320 33.8
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.0e-24 118.2 323 32.8
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.4e-24 117.9 340 33.8
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.8e-24 117.5 322 32.6
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.8e-24 117.5 343 34.4
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 4.0e-24 116.3 329 33.4
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.0e-24 116.3 336 33.6
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 5.2e-24 115.9 322 36.0
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.5e-23 114.4 336 32.7
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.5e-23 114.4 325 32.3
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 2.0e-23 114.0 317 32.8
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 2.6e-23 113.6 330 33.9
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 3.4e-23 113.2 335 32.8
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 7.5e-23 112.1 237 37.1
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.5e-23 112.1 332 34.0
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 1.3e-22 111.3 339 33.9
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.3e-22 111.3 318 32.1
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 2.9e-22 110.2 314 32.5
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 2.9e-22 110.2 307 33.2
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 3.7e-22 109.8 334 32.3
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 4.9e-22 109.4 318 31.8
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.1e-21 108.2 226 40.3
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 1.1e-21 108.2 292 33.6
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.4e-21 107.8 318 32.1
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.9e-21 107.5 314 29.3
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 2.4e-21 107.1 338 33.1
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.4e-21 105.9 334 30.2
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.2e-20 104.8 235 42.1
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 1.6e-20 104.4 215 40.0
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.6e-20 104.4 321 32.7
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.6e-20 104.4 277 31.4
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 3.5e-20 103.2 221 35.3
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 3.5e-20 103.2 339 33.0
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 4.6e-20 102.8 314 33.1
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 6.0e-20 102.4 318 32.1
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 6.0e-20 102.4 316 32.6
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.3e-19 101.3 193 47.2
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.7e-19 100.9 310 31.9
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 3.0e-19 100.1 315 30.8
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 5.6e-18 95.9 344 28.8
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.6e-17 94.4 332 28.9
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.6e-17 94.4 338 29.3
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 6.2e-17 92.4 355 31.8
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.1e-16 91.7 290 31.4
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.2e-15 88.2 311 30.2
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 1.5e-15 87.8 247 30.8
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.0e-15 87.4 273 28.9
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 5.8e-15 85.9 222 33.3
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 2.2e-14 84.0 123 43.9
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 4.9e-14 82.8 328 29.0
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 1.1e-13 81.6 329 28.9
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.6e-12 77.8 479 26.7
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 6.0e-12 75.9 128 50.8
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.0e-11 75.1 226 30.1
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.3e-11 74.7 320 27.2
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.7e-11 74.3 234 29.5
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 3.0e-11 73.6 117 44.4
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 3.0e-11 73.6 222 32.9
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 3.9e-11 73.2 205 36.6
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-10 71.6 228 28.5
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.5e-10 71.2 271 29.2
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 4.3e-10 69.7 318 28.0
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 5.6e-10 69.3 193 31.1
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 7.3e-10 68.9 159 34.0
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 2.8e-09 67.0 219 26.0
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.7e-09 66.2 211 33.6
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 6.2e-09 65.9 217 27.2
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 4.0e-08 63.2 173 31.8
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 5.8e-07 59.3 285 28.8
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 7.6e-07 58.9 340 24.7
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.7e-06 57.8 339 23.0
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 2.9e-06 57.0 194 29.4
Hund11841 Selenicereus undatus HOM05D002766 ORTHO05D002809 3.8e-06 56.6 239 24.7
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 4.9e-06 56.2 217 27.6
Ah.10g031490 Amaranthus hybridus HOM05D002766 ORTHO05D002809 6.4e-06 55.8 202 26.2


User provided reference genes

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