Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.2e-160 568.9 293 100.0
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.2e-158 563.1 293 98.0
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 9.3e-151 537.0 293 94.5
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.1e-150 535.8 293 93.2
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.7e-150 535.4 291 93.8
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.1e-148 530.0 295 92.5
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.5e-148 529.6 295 92.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 2.5e-148 528.9 295 92.2
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.2e-145 520.0 295 90.8
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.4e-143 513.1 295 90.2
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 2.5e-140 502.3 282 91.1
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 6.3e-139 497.7 295 87.1
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 4.1e-130 468.4 293 80.5
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 2.5e-127 459.1 293 80.2
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 6.1e-126 454.5 293 79.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.0e-125 453.8 293 79.2
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.0e-125 453.8 293 79.2
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.9e-125 451.8 295 77.3
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.7e-125 451.1 293 78.8
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.5e-124 449.9 293 78.5
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.6e-124 449.1 293 78.5
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.6e-124 449.1 293 78.5
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 4.4e-124 448.4 293 78.5
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 5.7e-124 448.0 293 77.5
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 6.3e-123 444.5 293 75.8
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.1e-122 443.7 293 78.8
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 1.4e-122 443.4 293 77.1
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.4e-122 443.4 293 76.8
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.8e-122 443.0 286 78.7
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 5.3e-122 441.4 293 78.5
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 7.0e-122 441.0 293 78.8
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.5e-121 439.9 293 78.2
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 2.0e-121 439.5 293 76.8
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.6e-121 439.1 293 76.5
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 5.9e-121 438.0 298 76.2
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.8e-120 435.3 293 77.8
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 5.0e-120 434.9 291 78.0
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 8.5e-120 434.1 291 77.7
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.1e-119 433.7 295 75.3
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.9e-119 433.0 291 77.7
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.9e-119 433.0 294 75.5
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.9e-119 433.0 293 76.8
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.5e-119 432.6 291 77.7
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 3.2e-119 432.2 296 73.6
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.2e-119 431.8 295 75.6
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 5.5e-119 431.4 293 76.5
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 5.5e-119 431.4 293 76.5
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 5.5e-119 431.4 293 76.5
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 7.2e-119 431.0 297 73.4
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.1e-118 429.5 291 76.6
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 2.1e-118 429.5 299 74.2
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.6e-118 428.7 292 74.3
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.6e-118 428.7 292 74.3
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 4.7e-118 428.3 297 74.7
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.4e-117 426.8 292 74.3
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.8e-117 426.4 291 76.3
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.1e-116 423.7 294 73.5
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 2.0e-116 422.9 294 71.8
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.0e-116 422.9 291 74.9
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.6e-116 422.5 298 73.8
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.3e-116 422.2 299 73.6
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 3.3e-116 422.2 294 73.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.3e-116 422.2 291 72.9
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 3.3e-116 422.2 299 72.2
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 4.4e-116 421.8 298 73.5
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 4.4e-116 421.8 297 72.1
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 5.7e-116 421.4 285 77.5
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 5.7e-116 421.4 294 73.1
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 7.4e-116 421.0 285 77.5
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 7.4e-116 421.0 293 75.8
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 7.4e-116 421.0 291 75.6
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 9.7e-116 420.6 292 73.6
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.3e-115 420.2 285 77.5
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.3e-115 420.2 292 74.3
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.3e-115 420.2 292 71.6
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.7e-115 419.9 293 72.7
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.8e-115 418.3 292 71.2
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 8.2e-115 417.5 283 74.9
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.4e-114 416.8 293 72.4
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-114 416.8 293 72.4
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.4e-114 416.8 297 72.1
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.1e-114 415.2 293 72.0
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 5.3e-114 414.8 293 71.7
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.3e-114 414.8 294 73.8
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.6e-113 413.3 291 73.9
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.0e-113 412.9 294 71.8
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 2.6e-113 412.5 297 71.0
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.6e-113 412.5 291 73.5
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 3.5e-113 412.1 285 74.4
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 3.5e-113 412.1 294 72.1
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.5e-113 411.8 293 71.7
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.7e-112 409.8 292 73.6
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.7e-112 409.8 283 72.8
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.7e-112 409.8 283 72.8
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.2e-112 409.5 294 70.7
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 2.9e-112 409.1 292 74.3
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.8e-112 408.7 288 72.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.5e-111 406.8 295 72.2
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.2e-111 405.6 293 73.4
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 4.2e-111 405.2 295 72.2
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 5.5e-111 404.8 297 72.1
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.2e-110 403.7 292 71.9
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 6.1e-110 401.4 293 72.0
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 8.0e-110 401.0 291 72.9
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 8.0e-110 401.0 286 73.1
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 8.0e-110 401.0 292 72.6
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.4e-109 400.2 298 70.8
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.4e-109 400.2 298 71.8
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 3.0e-109 399.1 280 75.7
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.2e-108 397.1 297 69.7
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 4.4e-108 395.2 297 69.7
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 5.7e-108 394.8 285 71.2
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 7.5e-108 394.4 295 70.8
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.7e-107 393.3 293 70.0
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.7e-107 393.3 283 72.1
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.2e-107 392.9 293 72.4
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 6.3e-107 391.3 295 69.8
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 8.3e-107 391.0 297 70.7
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.1e-106 390.6 295 69.8
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.2e-105 387.1 293 70.0
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.2e-104 382.9 215 93.0
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 2.2e-104 382.9 285 69.5
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 5.0e-104 381.7 291 68.0
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 8.5e-104 380.9 297 69.0
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 7.2e-103 377.9 273 71.8
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 4.7e-102 375.2 296 68.2
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 8.0e-102 374.4 287 69.7
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 5.2e-101 371.7 296 64.9
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.7e-99 366.7 292 66.1
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 3.7e-99 365.5 286 65.4
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.3e-99 364.4 293 69.3
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.7e-96 356.7 305 63.3
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.0e-96 355.1 292 66.4
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 8.0e-94 347.8 286 66.1
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.4e-93 347.1 296 63.9
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.0e-93 345.5 304 62.8
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 8.9e-93 344.4 304 62.5
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 8.9e-93 344.4 296 63.5
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.5e-92 343.6 306 60.5
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 3.4e-92 342.4 296 62.2
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.3e-91 340.5 296 61.8
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 7.0e-90 334.7 262 66.8
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.0e-88 330.9 293 61.1
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.4e-84 315.8 249 67.1
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 7.0e-82 308.1 292 57.9
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.4e-77 293.9 280 57.9
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 8.3e-75 284.6 281 56.6
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.4e-74 283.1 268 57.5
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.5e-68 263.8 196 73.5
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 1.3e-59 234.2 143 79.7
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.3e-59 234.2 277 46.9
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 4.9e-59 232.3 268 53.4
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 3.2e-58 229.6 279 50.9
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 3.5e-49 199.5 152 66.4
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.0e-48 198.0 126 73.0
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.3e-46 191.0 168 63.1
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.4e-42 177.6 138 69.6
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 9.0e-29 131.7 105 67.6
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 3.9e-24 116.3 332 26.2
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-23 114.4 110 58.2
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.6e-22 110.9 110 57.3
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 4.1e-21 106.3 88 69.3
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 6.5e-19 99.0 100 58.0
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 2.0e-15 87.4 73 58.9
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.9e-10 70.9 86 48.8
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 2.0e-07 60.8 73 47.9
DCAR_021512 Daucus carota HOM05D005748 ORTHO05D007123 9.7e-07 58.5 130 36.2


User provided reference genes

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