Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.5e-161 572.0 283 100.0
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 9.3e-156 553.5 283 96.5
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.6e-150 535.4 283 94.3
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.4e-150 535.0 283 93.6
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.7e-149 532.7 283 94.0
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 5.5e-148 527.7 283 92.9
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 7.1e-148 527.3 283 92.2
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.2e-147 526.6 283 92.2
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 4.6e-147 524.6 283 91.9
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 1.0e-146 523.5 283 91.5
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-146 522.7 283 91.5
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 3.9e-146 521.5 283 91.5
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 5.1e-146 521.2 275 93.1
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 6.7e-146 520.8 283 90.8
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 6.7e-146 520.8 283 90.8
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 1.6e-139 499.6 284 88.0
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.2e-133 479.2 283 82.3
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.9e-133 478.8 283 82.0
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.4e-132 476.5 283 83.4
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 9.3e-132 473.8 283 81.3
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 8.7e-130 467.2 283 80.2
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 2.5e-129 465.7 286 80.4
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 4.3e-129 464.9 288 79.5
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 1.7e-128 463.0 284 79.9
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-128 463.0 284 79.9
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 8.2e-128 460.7 283 79.9
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-127 459.9 286 79.0
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-127 459.9 286 79.0
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 5.3e-127 458.0 284 78.9
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 6.9e-127 457.6 285 78.9
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 6.9e-127 457.6 285 78.9
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 2.6e-126 455.7 285 78.9
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 3.9e-122 441.8 276 78.6
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.2e-115 420.2 277 73.6
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 2.7e-107 392.5 283 66.8
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 2.8e-104 382.5 287 64.5
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 4.8e-104 381.7 288 65.3
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 8.2e-104 380.9 287 64.5
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.1e-103 380.6 287 65.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 4.1e-103 378.6 287 65.2
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.2e-102 377.1 283 66.1
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 2.0e-102 376.3 284 64.4
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 2.7e-102 375.9 287 64.8
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 3.5e-102 375.6 287 65.9
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.5e-102 375.6 283 64.0
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 4.5e-102 375.2 280 65.4
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 1.0e-101 374.0 284 63.0
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 2.2e-101 372.9 280 64.3
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.9e-101 372.5 283 64.3
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.9e-100 369.8 283 63.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 2.5e-100 369.4 283 63.3
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 5.5e-100 368.2 284 62.7
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 7.2e-100 367.9 284 61.6
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 9.4e-100 367.5 283 64.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.4e-100 367.5 283 64.7
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.2e-99 367.1 287 63.4
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.6e-99 366.7 284 62.3
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 2.7e-99 365.9 279 63.4
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 4.7e-99 365.2 283 61.5
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.7e-99 365.2 283 64.3
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.1e-99 364.8 283 64.0
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 6.1e-99 364.8 283 63.6
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 8.0e-99 364.4 288 64.9
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.0e-98 364.0 287 62.4
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.0e-98 364.0 283 61.5
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.0e-98 364.0 284 62.7
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.8e-98 363.2 284 62.3
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.3e-98 362.8 284 62.0
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 3.0e-98 362.5 283 62.2
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 4.0e-98 362.1 285 61.1
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.8e-98 361.3 285 61.8
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 8.8e-98 360.9 288 60.8
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.5e-97 360.1 283 61.5
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.5e-97 360.1 283 62.5
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.0e-97 359.8 279 63.4
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 2.6e-97 359.4 280 62.1
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 5.7e-97 358.2 283 61.8
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 7.5e-97 357.8 280 61.1
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.2e-96 356.3 283 61.5
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 3.7e-96 355.5 282 60.6
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 3.7e-96 355.5 284 61.6
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 8.3e-96 354.4 283 61.5
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.1e-95 354.0 289 60.9
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.4e-95 353.6 281 61.2
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 2.4e-95 352.8 282 59.9
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 3.1e-95 352.4 285 58.6
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 4.1e-95 352.1 280 61.1
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 4.1e-95 352.1 289 60.2
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 5.4e-95 351.7 285 58.2
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 7.0e-95 351.3 243 67.5
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.2e-94 350.5 286 60.5
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.6e-94 350.1 284 59.2
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 2.0e-94 349.7 285 58.2
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 3.5e-94 349.0 280 61.8
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 3.5e-94 349.0 284 59.2
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 4.5e-94 348.6 284 60.2
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.5e-94 348.6 284 61.3
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.5e-94 348.6 284 60.6
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 5.9e-94 348.2 243 66.3
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 5.9e-94 348.2 283 59.0
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 7.7e-94 347.8 284 60.2
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 1.0e-93 347.4 285 60.0
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.0e-93 347.4 284 60.9
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.3e-93 347.1 290 58.3
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.3e-93 347.1 284 58.8
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.7e-93 346.7 284 60.9
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 6.5e-93 344.7 290 57.6
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 8.6e-93 344.4 286 60.1
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 8.6e-93 344.4 283 60.4
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 8.6e-93 344.4 283 59.7
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 1.5e-92 343.6 287 58.2
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.9e-92 343.2 283 60.1
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.5e-92 342.8 284 59.9
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 3.3e-92 342.4 285 58.2
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 3.3e-92 342.4 285 58.2
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 4.2e-92 342.0 283 59.0
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 1.2e-91 340.5 287 57.8
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 3.6e-91 339.0 283 58.7
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 8.0e-91 337.8 287 56.1
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 3.0e-90 335.9 281 58.7
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 4.0e-90 335.5 283 60.1
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 4.0e-90 335.5 281 58.7
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.5e-89 333.6 283 56.9
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 2.0e-89 333.2 284 56.0
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 3.4e-89 332.4 283 57.6
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 7.5e-89 331.3 313 54.6
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.8e-88 329.3 243 64.6
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 4.9e-88 328.6 288 56.6
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.1e-87 325.9 302 54.0
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.6e-86 323.6 287 55.7
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 2.7e-86 322.8 243 62.1
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 3.5e-86 322.4 283 57.2
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 5.0e-85 318.5 281 55.2
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 8.6e-85 317.8 279 56.6
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 9.5e-84 314.3 283 56.2
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.1e-83 313.2 284 55.3
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 2.8e-83 312.8 284 55.3
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.6e-83 312.4 283 57.2
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 6.1e-83 311.6 283 54.4
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 8.0e-83 311.2 283 57.2
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 7.5e-81 304.7 255 58.8
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 2.2e-80 303.1 284 54.2
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 9.2e-79 297.7 284 51.1
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.5e-76 289.7 276 51.8
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.2e-75 287.3 185 71.9
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 8.0e-75 284.6 265 54.0
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 6.8e-74 281.6 285 49.5
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 7.8e-70 268.1 254 53.9
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 2.5e-68 263.1 197 60.9
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 1.1e-66 257.7 245 49.4
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-66 256.9 140 90.0
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 6.8e-66 255.0 140 89.3
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 6.8e-66 255.0 140 89.3
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 1.4e-63 247.3 240 50.4
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 1.8e-58 230.3 241 44.0
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 3.4e-57 226.1 287 40.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 9.9e-57 224.6 186 57.5
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 8.1e-51 204.9 189 53.4
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 4.2e-47 192.6 166 53.6
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 2.7e-46 189.9 166 57.2
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.5e-44 184.1 168 56.5
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.6e-43 180.6 208 43.3
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.8e-43 179.9 183 55.2
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.0e-42 176.0 252 42.5
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 7.6e-41 171.8 241 34.4
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 6.4e-40 168.7 115 73.0
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 6.2e-27 125.6 74 83.8
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-20 104.4 124 40.3
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 6.1e-14 82.4 191 30.4


User provided reference genes

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