Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 3.7e-18 94.4 68 100.0
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.6e-16 89.0 68 94.1
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 2.0e-16 88.6 68 95.6
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 1.3e-15 85.9 68 70.6
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 1.3e-15 85.9 68 70.6
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 2.2e-15 85.1 68 91.2
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 2.2e-15 85.1 68 91.2
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 2.2e-15 85.1 68 89.7
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 3.8e-15 84.3 68 69.1
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 3.8e-15 84.3 68 69.1
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 3.8e-15 84.3 68 69.1
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 5.0e-15 84.0 68 85.3
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 1.1e-14 82.8 68 88.2
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.9e-14 82.0 68 89.7
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 1.9e-14 82.0 62 96.8
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 3.2e-14 81.3 68 88.2
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.2e-10 68.6 68 55.9
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 66.7
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 73.5
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 2.4e-09 65.1 68 66.2
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.4e-09 65.1 67 67.2
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 51.5
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 51.5
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 51.5
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 7.0e-09 63.5 68 60.3
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 7.0e-09 63.5 68 70.6
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 50.0
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 67.6
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.2e-08 62.8 68 63.2
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 1.6e-08 62.4 68 50.0
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 1.6e-08 62.4 68 48.5
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 2.0e-08 62.0 61 57.4
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 48.5
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 3.5e-08 61.2 67 56.7
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 3.5e-08 61.2 67 56.7
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 3.5e-08 61.2 61 73.8
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 4.5e-08 60.8 65 52.3
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 4.5e-08 60.8 65 52.3
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 66.2
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 70.6
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 5.9e-08 60.5 66 63.6
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 7.7e-08 60.1 65 49.2
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 7.7e-08 60.1 65 49.2
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 7.7e-08 60.1 65 49.2
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 47.1
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 69.1
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.0e-07 59.7 68 61.8
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 1.0e-07 59.7 64 50.0
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.0e-07 59.7 68 63.2
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 55.9
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 1.7e-07 58.9 65 47.7
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 1.7e-07 58.9 65 47.7
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 1.7e-07 58.9 65 47.7
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 1.7e-07 58.9 65 47.7
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.7e-07 58.9 68 66.2
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.7e-07 58.9 68 66.2
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.3e-07 58.5 65 55.4
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 66.7
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 46.2
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 46.2
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 60.3
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 3.8e-07 57.8 66 66.7
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 5.0e-07 57.4 66 60.6
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 5.0e-07 57.4 65 67.7
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 5.0e-07 57.4 68 50.0
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 6.6e-07 57.0 62 50.0
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 6.6e-07 57.0 68 63.2
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 6.6e-07 57.0 66 47.0
Aa31LG9G16900 Aethionema arabicum HOM05D002873 ORTHO05D002978 8.6e-07 56.6 68 69.1
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 8.6e-07 56.6 68 47.1
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 8.6e-07 56.6 62 64.5
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 48.5
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 1.1e-06 56.2 68 64.7
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 1.1e-06 56.2 68 66.2
Sc10g0001460 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.1e-06 56.2 34 88.2
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 65.2
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 1.5e-06 55.8 66 59.1
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.5e-06 55.8 66 66.7
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.5e-06 55.8 68 57.4
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 1.5e-06 55.8 66 56.1
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 56.1
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.9e-06 55.5 36 80.6
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 63.6
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 43.9
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 3.3e-06 54.7 66 47.0
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 54.5
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 5.5e-06 53.9 67 47.8
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 5.5e-06 53.9 67 47.8
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 5.5e-06 53.9 67 47.8
SpUn0185_0020 Schrenkiella parvula HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 67.6
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 7.2e-06 53.5 66 45.5
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 7.2e-06 53.5 69 58.0
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 7.2e-06 53.5 67 43.3
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 9.5e-06 53.1 66 65.2
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 9.5e-06 53.1 62 61.3
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 9.5e-06 53.1 63 44.4
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 9.5e-06 53.1 60 70.0
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 9.5e-06 53.1 68 57.4


User provided reference genes

Program Settings