Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 0.0e+00 1889.8 1182 100.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 0.0e+00 1624.0 1187 88.4
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 0.0e+00 1445.6 1189 79.7
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 0.0e+00 1282.3 1233 72.1
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 0.0e+00 1281.2 1195 72.9
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 0.0e+00 1180.6 1196 71.0
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 4.4e-308 1061.6 1194 64.2
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 5.9e-305 1051.2 1194 64.2
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 5.8e-292 1008.1 1200 62.3
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 6.6e-288 994.6 1083 66.0
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.2e-286 990.3 1084 66.0
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.3e-285 986.1 1200 61.2
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 8.2e-214 748.4 1048 57.7
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.4e-202 708.4 1097 51.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.6e-161 573.5 1023 47.1
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.5e-146 525.0 1058 42.9
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 3.0e-131 474.2 1285 43.2
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.4e-117 428.7 1235 34.0
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.4e-117 428.7 1279 37.8
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.4e-117 428.7 1279 40.6
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 2.7e-116 424.5 1280 40.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.1e-114 419.1 1269 37.5
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.3e-113 415.6 1268 37.8
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 2.2e-110 404.8 1282 39.9
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.1e-109 402.5 804 37.9
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.9e-109 401.7 1285 38.4
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 9.4e-109 399.4 1329 39.5
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.8e-107 395.2 1297 38.2
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.3e-107 394.8 1279 36.9
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 6.7e-107 393.3 1281 40.3
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 5.7e-106 390.2 1299 39.3
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 7.4e-106 389.8 1281 39.2
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.2e-105 388.3 1293 37.1
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 5.9e-103 380.2 1049 35.8
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 5.0e-102 377.1 835 37.5
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.4e-101 375.6 1248 37.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.4e-101 375.6 1284 35.7
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 7.2e-101 373.2 1113 41.2
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.0e-98 365.2 1245 37.4
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 2.6e-98 364.8 1300 38.7
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.7e-97 362.1 1252 37.9
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.1e-96 359.4 1082 37.6
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.8e-96 358.6 1313 36.9
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 5.3e-96 357.1 1187 36.4
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-95 355.9 1245 38.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.5e-95 355.5 1288 33.9
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 6.1e-92 343.6 850 35.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.8e-91 342.0 1249 37.2
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 3.5e-87 327.8 1306 38.1
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.0e-86 326.2 489 44.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.7e-86 325.5 1239 34.6
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.9e-86 324.7 1079 41.0
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 4.2e-85 320.9 1097 37.6
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 5.5e-85 320.5 1232 31.8
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.2e-84 319.3 1324 37.3
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.6e-84 318.9 1239 35.6
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.7e-84 318.2 1261 35.0
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-82 312.4 1302 37.6
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.7e-82 310.5 1312 37.6
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-81 308.9 1302 37.6
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.2e-79 302.8 1240 35.4
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.9e-77 295.4 1315 36.7
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 4.2e-77 294.3 1045 36.7
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-76 292.4 554 39.5
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.1e-76 292.0 1240 34.0
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 8.0e-76 290.0 1064 34.7
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.4e-75 289.3 1200 34.3
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.3e-75 288.5 1073 37.4
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-74 285.8 1311 36.2
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.8e-73 281.6 1238 34.5
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 3.7e-73 281.2 1081 33.9
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 7.0e-72 276.9 1033 35.8
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.8e-70 271.2 1039 31.4
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.9e-69 268.9 841 31.0
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.6e-68 265.8 474 38.6
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.1e-68 265.4 1295 36.1
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.4e-67 262.7 756 34.9
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 4.0e-67 261.2 1333 32.2
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 5.2e-67 260.8 1232 33.1
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.0e-66 258.8 484 38.8
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.8e-64 252.3 1328 29.3
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.6e-63 249.2 1086 30.4
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 3.5e-63 248.1 580 35.5
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.5e-61 241.9 749 32.0
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.5e-61 241.9 1045 35.5
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 4.3e-61 241.1 849 30.4
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 4.3e-61 241.1 1234 32.3
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.2e-60 239.6 1043 32.0
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.1e-60 238.8 1282 34.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.8e-60 238.4 1231 33.0
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.6e-58 231.9 631 33.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.6e-58 231.9 631 33.4
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 9.8e-58 229.9 605 33.7
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 6.4e-57 227.3 538 34.0
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.9e-56 225.7 603 32.8
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.0e-56 223.8 836 30.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.0e-55 222.2 1152 29.2
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 2.7e-55 221.9 847 29.9
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.5e-55 221.5 1210 31.5
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.3e-54 219.5 583 32.6
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 1.7e-54 219.2 1077 29.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.3e-54 218.8 1161 33.2
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.3e-53 213.8 567 32.5
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.1e-52 212.2 559 34.9
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.0e-51 208.0 1091 36.1
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.8e-51 207.2 606 31.7
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 6.8e-51 207.2 828 30.4
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.2e-50 206.5 1059 36.4
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.4e-50 204.5 700 30.9
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 9.8e-50 203.4 455 37.4
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.3e-49 203.0 733 31.4
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 3.7e-49 201.4 568 31.9
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.4e-49 200.7 645 31.2
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.4e-48 198.7 682 30.6
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 3.2e-48 198.4 846 29.0
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.1e-48 198.0 1253 31.2
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 7.1e-48 197.2 1057 28.8
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 9.2e-48 196.8 794 39.2
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 2.3e-46 192.2 465 35.3
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.3e-45 188.0 1274 28.1
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 4.3e-45 188.0 1059 28.5
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 9.5e-45 186.8 1392 31.2
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.6e-44 186.0 1179 31.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.4e-43 183.0 854 28.0
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-43 182.6 601 29.6
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.7e-41 176.0 582 32.8
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.4e-41 173.7 687 30.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 5.4e-40 171.0 1237 31.8
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 7.8e-39 167.2 593 28.3
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 1.0e-38 166.8 153 66.7
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 1.0e-38 166.8 153 66.7
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.3e-38 166.4 726 29.2
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.2e-36 159.8 312 38.1
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.6e-36 159.5 491 30.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 6.4e-33 147.5 546 30.6
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 7.1e-32 144.1 632 28.8
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.6e-31 142.9 1371 28.2
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-30 139.8 372 31.2
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.7e-30 139.4 534 29.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.3e-30 139.0 1056 27.4
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.6e-29 134.4 1128 33.5
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 3.1e-27 128.6 716 28.5
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 3.4e-26 125.2 561 28.3
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 4.4e-26 124.8 636 29.1
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 3.2e-24 118.6 1267 25.3
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.1e-23 115.9 585 27.4
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 3.5e-23 115.2 105 67.6
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.1e-21 110.2 394 28.9
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 3.3e-21 108.6 514 26.1
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 5.6e-21 107.8 483 28.0
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-19 103.2 636 25.2
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 3.1e-19 102.1 1074 30.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.5e-18 99.8 611 26.4
A03p24330 Brassica napus HOM05D003962 ORTHO05D004714 2.8e-12 79.0 69 65.2
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.8e-12 79.0 614 25.2
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 6.2e-12 77.8 446 26.7
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 2.0e-10 72.8 492 26.6
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.6e-07 63.2 1115 30.1
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.3e-06 59.3 393 27.5


User provided reference genes

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