Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 5.1e-109 397.9 223 100.0
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.4e-103 379.8 223 89.2
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 9.4e-103 377.1 223 88.3
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 8.8e-101 370.5 223 86.5
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.0e-100 369.4 223 87.0
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 1.3e-99 366.7 223 86.5
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 1.7e-99 366.3 223 87.0
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 4.8e-99 364.8 223 85.7
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 4.8e-99 364.8 223 85.7
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 8.2e-99 364.0 223 86.1
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 1.4e-98 363.2 223 86.5
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 5.3e-98 361.3 223 86.1
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 9.1e-98 360.5 223 85.2
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 1.6e-97 359.8 223 90.6
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 1.6e-97 359.8 223 90.6
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 3.5e-97 358.6 223 85.7
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 3.2e-95 352.1 223 87.4
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.2e-89 333.6 199 85.4
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 6.8e-85 317.8 225 77.8
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 4.5e-81 305.1 190 81.1
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 2.9e-67 259.2 190 72.6
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 3.7e-67 258.8 190 72.1
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 3.7e-67 258.8 194 69.6
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 6.4e-67 258.1 184 71.2
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 3.2e-66 255.8 196 68.4
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 4.1e-66 255.4 195 67.7
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 4.1e-66 255.4 189 70.4
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 7.0e-66 254.6 195 68.7
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 9.2e-66 254.2 195 68.7
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.2e-65 253.8 190 67.9
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 3.5e-65 252.3 193 67.4
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.6e-65 251.9 200 65.0
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 4.6e-65 251.9 195 67.2
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 5.9e-65 251.5 198 67.2
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.0e-64 250.8 200 65.0
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 1.0e-64 250.8 195 66.2
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 1.0e-64 250.8 196 67.3
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 1.3e-64 250.4 185 68.1
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 2.3e-64 249.6 194 68.0
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 3.0e-64 249.2 199 66.8
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.0e-64 249.2 200 64.5
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 3.0e-64 249.2 193 66.8
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 5.0e-64 248.4 195 67.7
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 6.6e-64 248.1 195 66.2
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 6.6e-64 248.1 190 67.9
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 6.6e-64 248.1 190 67.9
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 6.6e-64 248.1 191 66.5
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.6e-64 247.7 200 64.0
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.6e-64 247.7 200 64.0
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.9e-63 246.5 190 66.8
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 2.5e-63 246.1 194 65.5
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 2.5e-63 246.1 194 65.5
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 4.3e-63 245.4 192 66.7
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 4.3e-63 245.4 199 64.3
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 5.6e-63 245.0 195 67.2
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 7.3e-63 244.6 198 63.6
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 9.5e-63 244.2 188 69.1
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.2e-62 243.8 194 64.9
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 1.2e-62 243.8 192 66.7
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 2.1e-62 243.0 189 66.7
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.8e-62 242.7 188 68.6
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.8e-62 242.7 190 66.8
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 3.6e-62 242.3 192 67.2
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.6e-62 242.3 194 64.4
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 4.7e-62 241.9 195 66.7
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 6.2e-62 241.5 189 65.6
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 6.2e-62 241.5 196 64.3
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 6.2e-62 241.5 199 63.8
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 1.0e-61 240.7 189 67.2
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 1.0e-61 240.7 188 69.1
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 1.4e-61 240.4 225 59.6
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 3.1e-61 239.2 201 63.2
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 4.0e-61 238.8 182 68.7
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 4.0e-61 238.8 180 66.7
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 4.0e-61 238.8 190 65.3
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 5.2e-61 238.4 198 62.1
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.2e-61 238.4 180 67.2
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 5.2e-61 238.4 192 65.6
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 5.2e-61 238.4 195 64.6
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 8.9e-61 237.7 200 65.0
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.2e-60 237.3 200 65.0
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 2.6e-60 236.1 185 64.3
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 3.4e-60 235.7 196 63.8
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.7e-59 233.4 189 64.6
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 2.2e-59 233.0 182 64.8
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.9e-59 232.6 198 61.1
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 1.1e-58 230.7 191 63.9
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 1.9e-58 229.9 185 64.3
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 5.4e-58 228.4 191 62.3
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 7.8e-57 224.6 188 61.2
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 3.9e-56 222.2 190 63.7
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 3.9e-56 222.2 227 55.9
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 6.6e-56 221.5 195 62.1
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 1.1e-55 220.7 192 59.4
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 1.2e-54 217.2 186 63.4
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.2e-54 217.2 155 69.0
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.2e-54 217.2 155 69.0
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 8.1e-54 214.5 198 59.6
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 8.1e-54 214.5 171 63.7
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 6.8e-53 211.5 191 55.5
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 3.7e-51 205.7 144 72.2
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 6.4e-51 204.9 186 59.7
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 2.7e-49 199.5 161 65.8
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 4.3e-47 192.2 157 61.8
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 8.9e-45 184.5 131 75.6
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.7e-43 180.3 157 59.2
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 1.1e-42 177.6 352 35.8
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.1e-42 174.9 128 68.8
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.6e-41 173.7 191 53.4
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.7e-40 170.2 132 65.9
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 2.0e-36 156.8 190 45.3
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 9.9e-36 154.5 89 84.3
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.4e-34 149.8 110 75.5
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 9.3e-34 147.9 107 72.9
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 6.0e-33 145.2 101 71.3
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.8e-33 144.8 136 57.4
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 2.3e-32 143.3 191 40.3
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 1.3e-30 137.5 109 67.9
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 2.4e-29 133.3 119 62.2
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 1.5e-28 130.6 201 42.8
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 4.6e-25 119.0 192 35.4
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 1.1e-23 114.4 198 41.9
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 2.8e-22 109.8 76 75.0
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.2e-20 104.4 127 48.8
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.9e-17 91.7 64 71.9
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.1e-15 87.8 66 66.7
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.1e-14 83.6 62 72.6
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 2.6e-12 76.6 59 61.0
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 3.4e-12 76.3 186 29.6
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.6e-12 75.1 47 76.6
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 5.5e-10 68.9 55 60.0
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 4.8e-06 55.8 59 45.8


User provided reference genes

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