Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 1.3e-123 446.4 224 100.0
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 1.4e-114 416.4 224 94.2
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 2.5e-111 405.6 222 91.9
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 4.8e-107 391.3 225 89.8
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 1.5e-103 379.8 225 88.9
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 5.5e-103 377.9 225 87.1
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 2.4e-98 362.5 225 84.0
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 2.0e-97 359.4 223 83.4
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.7e-96 356.3 224 83.5
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 2.2e-96 355.9 224 83.5
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 3.6e-94 348.6 224 81.2
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 2.0e-92 342.8 224 78.6
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 6.3e-91 337.8 225 78.7
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 5.9e-89 331.3 203 80.3
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 7.7e-89 330.9 229 75.1
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 6.6e-88 327.8 214 76.6
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 3.3e-87 325.5 230 74.3
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 7.3e-87 324.3 219 76.7
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 1.2e-86 323.6 209 76.6
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 1.2e-86 323.6 228 73.7
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 2.1e-86 322.8 215 77.2
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 2.8e-86 322.4 222 75.7
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 4.7e-86 321.6 207 78.7
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 8.0e-86 320.9 229 72.1
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 1.4e-85 320.1 206 79.1
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 1.8e-85 319.7 182 84.6
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 3.0e-85 318.9 181 84.5
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 4.0e-85 318.5 222 74.3
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 6.8e-85 317.8 227 71.4
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 6.8e-85 317.8 224 71.0
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 1.5e-84 316.6 224 74.1
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 2.0e-84 316.2 198 79.3
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 2.6e-84 315.8 224 74.1
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 3.4e-84 315.5 224 72.8
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 4.4e-84 315.1 198 77.8
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.4e-84 315.1 195 80.5
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.4e-84 315.1 227 73.6
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 7.5e-84 314.3 205 75.6
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 9.8e-84 313.9 181 84.5
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 1.3e-83 313.5 200 79.0
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 2.2e-83 312.8 229 72.5
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 2.9e-83 312.4 184 82.6
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 6.4e-83 311.2 227 72.7
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 8.3e-83 310.8 256 67.6
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 3.2e-82 308.9 203 76.8
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 4.1e-82 308.5 178 83.7
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 4.1e-82 308.5 201 77.6
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 4.1e-82 308.5 222 72.5
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 7.0e-82 307.8 200 75.0
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 1.6e-81 306.6 182 82.4
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.6e-81 306.6 229 70.3
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 5.9e-81 304.7 193 77.7
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 1.3e-80 303.5 236 68.2
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 1.7e-80 303.1 233 67.8
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 1.7e-80 303.1 208 72.6
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 3.9e-80 302.0 179 83.8
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 5.0e-80 301.6 206 73.3
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 5.0e-80 301.6 185 76.2
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 5.0e-80 301.6 219 69.9
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 8.6e-80 300.8 235 66.8
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 1.5e-79 300.1 217 69.6
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 2.5e-79 299.3 218 71.1
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 4.3e-79 298.5 175 82.9
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 5.6e-79 298.1 225 69.3
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 5.6e-79 298.1 203 72.9
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 7.3e-79 297.7 181 78.5
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 9.5e-79 297.4 182 77.5
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 1.6e-78 296.6 181 77.9
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 2.1e-78 296.2 206 71.4
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 2.1e-78 296.2 180 78.9
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 3.6e-78 295.4 256 62.9
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 1.4e-77 293.5 198 74.2
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 8.9e-77 290.8 183 77.6
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 1.2e-76 290.4 173 81.5
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 1.2e-76 290.4 173 81.5
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 1.2e-76 290.4 182 79.1
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 2.6e-76 289.3 192 77.1
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 3.4e-76 288.9 203 71.9
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 5.8e-76 288.1 188 74.5
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 9.8e-76 287.3 182 80.2
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 1.3e-75 287.0 173 80.3
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 2.9e-75 285.8 176 79.5
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 8.3e-75 284.3 308 53.9
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 2.4e-74 282.7 156 85.9
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 4.1e-74 282.0 218 67.0
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 2.0e-73 279.6 194 73.2
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 2.7e-73 279.3 212 67.0
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 6.0e-73 278.1 160 82.5
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 6.6e-72 274.6 156 84.0
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 8.6e-72 274.2 187 75.9
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 2.8e-70 269.2 166 76.5
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 9.2e-66 254.2 237 57.4
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 7.8e-65 251.1 169 74.0
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 5.1e-64 248.4 173 69.9
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 8.1e-62 241.1 147 77.6
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 1.4e-58 230.3 118 91.5
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 7.1e-58 228.0 154 74.0
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 3.5e-57 225.7 164 68.3
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 4.3e-55 218.8 122 82.0
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 3.6e-54 215.7 200 55.0
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.9e-50 203.4 122 75.4
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 2.1e-49 199.9 189 51.9
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 8.7e-48 194.5 212 50.0
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 8.4e-43 177.9 115 78.3
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 8.4e-43 177.9 115 78.3
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 5.4e-42 175.3 118 69.5
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 2.1e-41 173.3 173 54.9
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 2.1e-41 173.3 99 80.8
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 2.9e-27 126.3 112 63.4
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 2.7e-25 119.8 65 83.1
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 1.9e-23 113.6 72 77.8
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 5.5e-18 95.5 166 37.3
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 2.7e-17 93.2 126 34.9
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.3e-16 90.9 62 72.6
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 3.3e-15 86.3 48 83.3
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 6.3e-14 82.0 129 33.3
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 3.1e-13 79.7 101 49.5
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 2.2e-11 73.6 98 49.0
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 2.6e-07 60.1 123 27.6
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 3.3e-07 59.7 198 24.2


User provided reference genes

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