Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 0.0e+00 1856.3 949 100.0
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 0.0e+00 1674.4 952 90.9
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 0.0e+00 1544.3 953 84.5
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 0.0e+00 1531.2 952 83.6
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 0.0e+00 1462.2 956 81.0
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 0.0e+00 1392.9 956 77.2
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1377.8 957 77.2
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 0.0e+00 1367.1 957 76.8
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1366.7 956 76.6
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1365.9 956 76.5
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1352.8 954 75.2
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1352.8 954 75.2
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 0.0e+00 1344.7 956 75.8
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 0.0e+00 1237.2 963 70.5
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 4.2e-277 958.4 968 56.9
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 1.6e-239 833.6 567 75.3
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.1e-229 800.8 953 53.4
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 3.6e-188 662.9 1022 43.3
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 7.6e-186 655.2 1020 41.7
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 8.4e-185 651.7 1040 43.1
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 5.4e-184 649.0 1017 42.6
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 7.9e-183 645.2 1026 43.0
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.5e-181 641.0 1026 41.3
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.3e-180 637.9 1074 40.3
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.1e-180 637.1 1023 42.2
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 4.5e-178 629.4 1017 41.5
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.2e-176 623.2 1022 41.9
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 4.2e-176 622.9 1014 41.4
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 5.5e-176 622.5 1013 40.1
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 7.1e-176 622.1 1010 41.8
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.6e-175 620.9 1016 41.3
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 2.1e-175 620.5 1015 40.9
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.1e-173 614.8 989 41.5
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 2.5e-173 613.6 1000 41.2
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 3.4e-170 603.2 1013 41.7
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 5.9e-162 575.9 1022 39.9
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 4.6e-159 566.2 1014 39.3
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.3e-158 563.9 1017 39.6
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.3e-157 559.7 1021 38.9
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.3e-156 558.1 1017 38.8
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 1.3e-156 558.1 1041 39.3
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.3e-156 555.8 1018 38.9
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.1e-149 535.0 1026 39.1
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 3.3e-149 533.5 995 38.7
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 7.4e-149 532.3 892 40.7
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 4.8e-148 529.6 1030 38.0
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.0e-145 521.9 991 38.2
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 2.2e-145 520.8 1021 37.1
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 2.5e-144 517.3 1010 37.8
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 9.4e-144 515.4 1071 35.9
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.6e-143 514.6 1070 35.9
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.8e-142 511.1 1010 37.2
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.0e-142 510.4 1026 38.7
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.8e-140 503.8 975 37.5
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.8e-139 501.1 1020 37.6
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-138 498.4 1015 37.5
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 2.6e-138 497.3 1011 37.0
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.3e-137 495.0 1013 36.9
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.4e-131 474.9 999 36.4
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.1e-131 473.8 836 38.4
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.0e-130 471.1 1028 36.6
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 2.7e-130 470.7 896 37.6
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 4.5e-130 469.9 998 36.2
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.5e-128 464.9 1013 36.0
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.5e-128 464.2 966 35.7
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 5.5e-128 463.0 879 37.9
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.6e-127 461.5 1002 36.1
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 2.3e-126 457.6 1021 36.5
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.3e-124 451.8 1017 34.8
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 2.8e-124 450.7 1009 36.6
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 2.8e-124 450.7 992 36.6
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.7e-124 450.3 1033 35.4
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 2.4e-123 447.6 992 36.7
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.4e-123 447.6 798 39.0
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 5.9e-122 443.0 1006 34.5
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 7.7e-122 442.6 992 35.2
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 6.6e-121 439.5 320 75.9
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 8.6e-121 439.1 1004 35.8
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.9e-120 438.0 1010 34.9
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 5.5e-120 436.4 1028 34.4
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 8.0e-119 432.6 1019 35.1
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 6.8e-118 429.5 1017 35.0
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.2e-117 428.7 1011 35.2
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 2.0e-117 427.9 1021 34.2
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 1.3e-116 425.2 1000 35.6
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.3e-116 425.2 995 35.5
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.7e-116 423.7 1008 33.9
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.7e-116 423.7 996 35.4
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 3.1e-115 420.6 786 39.2
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.2e-114 418.7 988 33.6
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 8.0e-111 406.0 990 35.1
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 8.0e-111 406.0 858 37.1
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.5e-109 401.7 993 34.6
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 1.2e-106 392.1 892 33.9
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.2e-106 392.1 937 33.7
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 2.9e-100 370.9 942 34.0
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 4.7e-95 353.6 1045 32.5
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 5.8e-85 320.1 1003 30.2
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 2.2e-84 318.2 665 37.1
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 2.7e-82 311.2 1005 29.9
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 7.8e-82 309.7 624 35.9
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 3.0e-81 307.8 852 30.8
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 3.9e-81 307.4 1011 30.5
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.3e-80 303.1 921 30.7
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.8e-76 290.8 485 41.0
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 4.6e-74 283.9 1013 28.9
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 3.4e-69 267.7 480 40.6
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.8e-62 245.4 606 34.0
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.9e-60 238.0 479 38.0
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.0e-57 229.6 1090 25.9
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.8e-57 228.8 332 45.2
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.8e-57 228.8 922 27.8
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 7.4e-56 223.4 427 40.7
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 4.8e-55 220.7 316 42.4
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.5e-48 199.1 379 40.1
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 4.6e-42 177.6 166 60.8
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.5e-40 172.6 251 47.4
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.3e-33 148.7 312 34.9
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 3.7e-31 141.4 251 43.4
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 1.5e-29 136.0 363 32.8
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 3.8e-28 131.3 232 42.7
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 5.9e-21 107.5 984 23.1
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 3.2e-11 75.1 186 37.1
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 1.4e-09 69.7 151 30.5
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 5.2e-09 67.8 76 57.9
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.0e-08 65.9 168 33.3
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 5.7e-08 64.3 126 34.9
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 2.8e-07 62.0 98 48.0
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 5.4e-06 57.8 191 29.3


User provided reference genes

Program Settings