Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.6e-149 532.7 270 100.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 3.1e-132 475.3 265 89.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.3e-119 433.3 260 84.6
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 4.2e-105 385.2 258 75.2
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 6.0e-104 381.3 259 74.1
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 7.9e-104 380.9 259 74.1
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.0e-82 310.8 264 62.5
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 5.5e-81 305.1 203 76.8
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 6.1e-80 301.6 220 73.2
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.5e-78 297.0 202 74.3
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.8e-76 290.0 252 60.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.4e-76 289.7 269 60.2
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-74 283.9 244 61.5
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 2.9e-74 282.7 239 60.7
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.7e-61 240.4 284 48.9
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.8e-60 236.9 262 50.4
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.5e-59 232.6 248 54.8
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.9e-58 229.6 287 46.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 5.0e-58 228.8 252 49.2
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.5e-57 226.5 288 47.9
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.2e-57 225.7 293 44.4
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 7.2e-57 224.9 288 45.8
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 9.4e-57 224.6 288 46.9
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 3.6e-56 222.6 280 46.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 4.7e-56 222.2 284 45.4
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.7e-56 222.2 284 45.4
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 4.7e-56 222.2 267 48.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 8.0e-56 221.5 286 45.1
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.8e-55 220.3 284 45.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.8e-55 220.3 253 49.0
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-55 219.9 284 45.1
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.2e-55 218.8 284 44.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 8.8e-55 218.0 301 43.2
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.2e-54 217.6 298 42.3
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.6e-54 216.5 203 58.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 3.4e-54 216.1 282 47.2
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 4.4e-54 215.7 297 43.4
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 9.8e-54 214.5 291 41.9
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 9.8e-54 214.5 292 41.8
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.7e-53 213.8 286 43.4
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.8e-53 213.0 288 41.7
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 4.8e-53 212.2 282 44.7
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 8.3e-53 211.5 287 45.3
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.1e-52 211.1 273 47.3
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.8e-52 210.3 296 42.6
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 3.1e-52 209.5 285 45.3
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 9.1e-52 208.0 288 44.1
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 9.1e-52 208.0 277 43.7
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 9.1e-52 208.0 283 43.5
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.0e-51 206.8 316 41.8
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 4.5e-51 205.7 277 45.1
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.5e-51 205.7 291 41.6
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 7.7e-51 204.9 285 41.8
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.7e-50 203.8 282 44.7
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.2e-50 203.4 289 40.5
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.2e-50 203.4 264 47.0
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 2.2e-50 203.4 287 43.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.9e-50 203.0 279 46.2
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.5e-49 200.7 273 45.1
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.9e-49 200.3 293 41.3
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.5e-49 198.7 289 42.2
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.7e-48 196.4 268 44.4
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.7e-48 196.4 257 45.1
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.7e-48 196.4 282 43.6
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.7e-48 195.7 283 42.0
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 6.1e-48 195.3 289 41.2
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 8.0e-48 194.9 287 42.5
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.0e-47 194.5 252 44.8
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.4e-47 194.1 288 41.0
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.8e-47 193.7 288 40.3
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.8e-47 193.7 232 49.1
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 5.2e-47 192.2 266 43.6
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.2e-46 191.0 275 41.1
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.2e-46 191.0 289 41.5
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.5e-46 190.7 287 39.0
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.0e-46 190.3 283 40.3
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.6e-46 189.9 287 42.2
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 3.4e-46 189.5 287 41.5
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 4.4e-46 189.1 288 39.9
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 2.2e-45 186.8 287 41.1
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.1e-44 184.5 266 42.1
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.4e-44 184.1 284 41.5
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.8e-44 183.7 287 41.1
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.2e-43 181.0 265 41.1
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.7e-43 179.9 288 36.1
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 7.7e-43 178.3 203 50.7
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.3e-42 177.6 265 41.5
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.3e-37 161.0 128 65.6
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.3e-37 161.0 204 45.1
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.2e-37 160.2 277 35.7
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 3.7e-37 159.5 143 59.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 4.9e-37 159.1 106 77.4
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.1e-36 157.9 159 53.5
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.0e-35 153.7 291 36.8
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.7e-35 153.3 197 45.7
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 3.5e-35 152.9 197 47.2
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.3e-34 151.0 233 38.6
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 5.6e-33 145.6 210 40.0
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.6e-32 142.9 159 47.8
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 4.7e-32 142.5 250 38.0
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 8.9e-31 138.3 265 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.5e-30 137.5 288 31.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 9.8e-30 134.8 219 39.7
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 6.4e-29 132.1 209 38.8
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.7e-27 126.7 279 32.3
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.2e-24 117.9 137 46.7
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.1e-24 117.1 175 39.4
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 6.2e-24 115.5 237 32.9
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.1e-23 113.2 108 54.6
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.1e-20 104.8 89 62.9
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.4e-20 104.4 121 48.8
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.4e-20 104.4 252 28.6
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 9.5e-17 91.7 72 66.7
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.2e-16 91.3 110 45.5
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.3e-15 87.0 198 31.3
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.8e-15 85.5 117 37.6
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 5.8e-14 82.4 295 24.7
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-13 81.3 82 58.5
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-13 81.3 82 58.5
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 7.3e-09 65.5 152 34.9
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 7.3e-09 65.5 58 55.2
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.2e-08 64.7 57 54.4
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.6e-08 64.3 141 31.2
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 2.1e-08 63.9 58 53.4
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.6e-08 63.2 57 52.6


User provided reference genes

Program Settings