Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.9e-94 347.1 170 100.0
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.8e-90 335.9 170 95.9
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.0e-89 332.4 170 94.7
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.0e-88 327.8 170 93.5
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 8.5e-88 327.0 170 92.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 3.2e-87 325.1 172 93.0
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 5.5e-87 324.3 171 93.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 5.5e-87 324.3 171 93.6
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 7.2e-87 323.9 171 93.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 7.2e-87 323.9 171 93.6
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 7.2e-87 323.9 171 92.4
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 9.4e-87 323.6 170 91.8
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 2.7e-86 322.0 170 91.2
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.7e-86 322.0 171 93.0
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 3.6e-86 321.6 170 91.8
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 3.6e-86 321.6 170 91.8
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 6.1e-86 320.9 170 90.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.0e-85 320.1 170 91.2
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 5.2e-85 317.8 170 90.6
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.5e-84 316.2 170 89.4
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.3e-84 315.1 170 90.0
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.8e-83 312.0 170 90.0
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 6.3e-83 310.8 170 87.6
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 3.5e-81 305.1 170 87.6
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 3.5e-81 305.1 170 87.6
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.5e-81 304.7 167 89.8
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.0e-80 303.5 170 85.9
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.5e-80 300.8 170 87.1
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.5e-79 298.9 170 87.6
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 7.2e-79 297.4 170 85.3
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-78 296.6 170 85.3
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 2.7e-78 295.4 170 84.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.7e-78 295.4 171 84.8
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 3.6e-78 295.0 170 85.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.7e-78 294.7 168 84.5
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.3e-77 292.4 172 85.5
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.3e-77 292.4 170 84.7
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.0e-77 291.6 163 85.9
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 6.7e-77 290.8 168 83.3
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 6.7e-77 290.8 163 85.9
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.7e-77 290.8 163 85.9
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.7e-77 290.8 163 85.9
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.8e-77 290.4 163 85.3
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.8e-77 290.4 163 85.3
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-76 290.0 149 91.3
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.5e-76 289.7 163 85.9
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.5e-76 289.7 149 91.9
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 2.6e-76 288.9 170 81.2
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.6e-76 288.9 163 85.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.6e-76 288.9 169 83.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 3.3e-76 288.5 170 82.9
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 3.3e-76 288.5 170 80.6
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.7e-76 287.0 170 82.4
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.7e-76 287.0 170 82.4
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.7e-75 286.2 160 86.9
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.8e-75 285.4 170 81.2
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 6.3e-75 284.3 157 86.6
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 8.2e-75 283.9 160 84.4
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.8e-74 282.7 165 82.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.4e-74 282.3 158 85.4
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.4e-74 282.3 158 85.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.0e-74 280.8 170 80.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 7.0e-74 280.8 169 78.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.2e-73 280.0 170 80.0
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 2.0e-73 279.3 170 81.2
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 7.7e-73 277.3 170 79.4
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.0e-72 276.9 170 80.6
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.0e-72 276.9 168 79.2
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 178 77.0
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.2e-72 275.8 170 77.6
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.5e-71 273.1 164 77.4
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.9e-71 272.7 170 81.2
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.5e-71 272.3 178 75.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.5e-71 272.3 169 78.7
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.5e-71 272.3 170 78.2
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 3.2e-71 271.9 170 76.5
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 9.4e-71 270.4 149 84.6
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.4e-71 270.4 173 76.3
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 9.4e-71 270.4 173 79.8
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 9.4e-71 270.4 168 76.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.7e-70 268.9 168 76.2
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 4.7e-70 268.1 178 74.2
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 6.1e-70 267.7 178 73.0
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 6.1e-70 267.7 148 85.8
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 6.1e-70 267.7 176 75.6
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 8.0e-70 267.3 156 80.1
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 8.0e-70 267.3 173 78.0
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 8.0e-70 267.3 168 78.0
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.4e-69 266.5 178 74.7
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.8e-69 266.2 168 76.8
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 2.3e-69 265.8 164 78.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.3e-69 265.8 169 76.3
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 3.0e-69 265.4 168 76.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 4.0e-69 265.0 170 75.3
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 4.0e-69 265.0 171 76.6
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 6.8e-69 264.2 174 74.1
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.8e-69 263.8 170 74.7
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 8.8e-69 263.8 175 73.7
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.2e-68 263.5 163 77.9
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.5e-68 263.1 156 79.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.5e-68 263.1 161 78.3
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.0e-68 262.7 174 75.3
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 2.0e-68 262.7 178 71.9
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.0e-68 262.7 171 76.6
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 166 75.9
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 5.7e-68 261.2 174 75.3
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 5.7e-68 261.2 163 77.3
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 5.7e-68 261.2 170 74.7
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 7.5e-68 260.8 164 76.2
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 9.8e-68 260.4 164 76.8
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 9.8e-68 260.4 172 75.0
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 2.2e-67 259.2 170 77.1
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.8e-67 258.8 174 74.7
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 2.8e-67 258.8 174 74.7
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.3e-67 257.7 174 71.8
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 8.3e-67 257.3 175 74.3
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.4e-66 256.5 158 79.1
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 2.4e-66 255.8 157 77.7
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.1e-66 255.4 175 73.7
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 5.4e-66 254.6 170 71.8
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 5.4e-66 254.6 166 74.1
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 5.4e-66 254.6 166 74.1
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 5.4e-66 254.6 151 81.5
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 9.1e-66 253.8 152 77.6
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 9.1e-66 253.8 160 78.1
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 2.0e-65 252.7 157 77.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.7e-65 252.3 175 72.6
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 4.5e-65 251.5 157 75.8
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.0e-64 250.4 162 75.3
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-64 250.0 155 75.5
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.7e-64 249.6 172 73.3
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 3.8e-64 248.4 157 76.4
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.9e-63 246.1 164 70.1
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.2e-63 245.4 228 57.0
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.5e-63 244.6 162 72.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 9.8e-60 233.8 142 76.8
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.7e-59 231.9 155 71.0
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 4.9e-59 231.5 176 67.0
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.1e-58 230.3 127 83.5
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.2e-57 226.9 140 76.4
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.3e-56 223.4 156 69.2
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.5e-55 219.9 129 79.1
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.7e-51 206.5 142 66.2
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 4.9e-51 204.9 130 75.4
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.3e-48 196.1 170 64.1
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.3e-48 196.1 109 84.4
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 3.7e-43 178.7 134 64.9
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.4e-42 176.0 158 57.6
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.2e-42 175.6 133 60.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.2e-41 173.7 134 61.9
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 5.0e-40 168.3 134 59.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.5e-39 166.8 147 57.8
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 2.5e-39 166.0 108 78.7
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-38 162.9 88 94.3
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 3.2e-34 149.1 86 87.2
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 4.6e-33 145.2 112 68.8
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 8.6e-32 141.0 170 50.6
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 3.6e-30 135.6 120 52.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.0e-29 132.1 158 51.9
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.2e-29 131.7 68 85.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.4e-26 123.6 99 60.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.9e-26 123.2 98 64.3
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.5e-25 119.0 174 39.7
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.1e-24 115.2 118 43.2
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 1.5e-23 113.6 71 76.1
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.6e-23 110.9 124 41.9
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.6e-23 110.9 124 41.9
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 6.2e-22 108.2 56 82.1
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.5e-20 103.6 65 70.8
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 2.5e-15 86.3 96 41.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 2.5e-15 86.3 96 41.7
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 7.3e-15 84.7 61 63.9
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.6e-14 83.6 55 72.7
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 4.8e-14 82.0 95 38.9
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 9.9e-12 74.3 42 69.0
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.1e-10 70.9 95 42.1


User provided reference genes

Program Settings