Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 2.2e-186 656.0 404 100.0
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 8.2e-181 637.5 398 99.0
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 1.1e-174 617.1 400 96.2
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.4e-171 605.5 397 94.2
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 4.5e-171 605.1 392 95.7
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 6.5e-170 601.3 390 95.6
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 6.5e-170 601.3 390 95.6
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 6.5e-170 601.3 390 95.6
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 2.5e-169 599.4 389 95.4
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 5.5e-169 598.2 390 95.1
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 5.5e-169 598.2 390 95.1
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 3.1e-164 582.4 400 86.8
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 6.5e-162 574.7 403 90.6
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 6.5e-154 548.1 405 75.6
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 4.4e-150 535.4 401 71.8
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 2.5e-137 493.0 402 65.9
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 2.8e-136 489.6 402 78.9
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 4.7e-136 488.8 405 68.9
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 4.7e-136 488.8 402 78.1
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.0e-135 487.6 407 77.9
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.0e-135 487.6 407 77.9
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.4e-135 487.3 399 78.4
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.8e-135 486.9 420 65.2
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.2e-134 484.2 394 79.2
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.6e-134 483.0 394 78.9
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.6e-134 483.0 399 78.2
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 2.6e-134 483.0 394 80.2
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 2.6e-134 483.0 399 77.7
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.4e-134 482.6 399 78.2
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 3.4e-134 482.6 402 73.4
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 5.7e-134 481.9 399 77.9
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 2.2e-133 479.9 401 72.6
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.9e-133 479.6 405 75.3
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 6.4e-133 478.4 394 78.2
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 6.4e-133 478.4 401 72.3
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 8.3e-133 478.0 399 76.9
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.1e-132 477.6 402 76.4
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.8e-132 476.9 397 77.1
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 4.1e-132 475.7 394 77.9
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 5.4e-132 475.3 412 72.8
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 7.0e-132 474.9 405 76.8
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 9.2e-132 474.6 395 68.9
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.2e-131 474.2 401 70.6
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.6e-131 473.8 402 75.9
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 2.7e-131 473.0 390 78.2
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 2.7e-131 473.0 407 76.7
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 3.5e-131 472.6 409 64.1
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 5.9e-131 471.9 406 75.9
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.0e-130 471.1 421 64.4
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.0e-130 471.1 401 75.6
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 1.3e-130 470.7 396 75.0
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.7e-130 470.3 394 78.4
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 3.0e-130 469.5 397 73.0
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 3.0e-130 469.5 395 71.6
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 3.0e-130 469.5 395 71.6
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 3.9e-130 469.2 405 75.8
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 5.0e-130 468.8 413 66.6
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 5.0e-130 468.8 394 78.4
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.0e-130 468.8 421 64.1
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 5.0e-130 468.8 395 71.6
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 5.0e-130 468.8 394 78.2
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 5.0e-130 468.8 394 76.4
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 6.6e-130 468.4 394 77.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 3.3e-129 466.1 402 75.1
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 9.5e-129 464.5 394 76.4
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.2e-128 464.2 396 76.5
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 1.2e-128 464.2 398 76.6
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 1.2e-128 464.2 394 78.4
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 3.6e-128 462.6 394 75.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 3.6e-128 462.6 396 71.5
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.8e-127 460.3 394 76.6
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 2.3e-127 459.9 389 75.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.1e-127 459.5 394 77.4
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 6.8e-127 458.4 401 67.8
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.5e-126 457.2 409 64.5
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 2.0e-126 456.8 402 76.1
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.3e-125 454.1 403 67.0
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 2.2e-125 453.4 402 74.9
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.2e-125 453.4 397 67.8
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.2e-125 453.4 397 67.8
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.9e-125 453.0 385 77.4
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 4.9e-125 452.2 399 76.4
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.9e-125 452.2 397 67.5
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.4e-125 451.8 403 62.0
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 8.3e-125 451.4 395 65.8
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 8.3e-125 451.4 389 75.8
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.1e-124 451.1 422 70.6
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 2.7e-123 446.4 393 73.3
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 3.5e-123 446.0 420 62.4
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.3e-122 444.1 393 69.0
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 2.3e-122 443.4 393 65.4
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 3.0e-122 443.0 389 65.8
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.6e-122 441.8 389 65.8
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 8.6e-122 441.4 389 66.1
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 8.1e-120 434.9 402 63.9
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 8.1e-120 434.9 402 63.9
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.4e-119 434.1 390 72.8
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 4.0e-119 432.6 429 60.4
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 8.9e-119 431.4 405 63.5
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.4e-118 429.1 395 64.3
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 5.8e-118 428.7 397 60.2
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-117 427.2 402 61.2
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 3.7e-117 426.0 395 72.7
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.1e-116 424.5 388 72.9
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.4e-116 423.3 396 71.2
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.7e-114 417.2 395 64.3
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 3.3e-113 412.9 401 71.1
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 3.3e-113 412.9 521 56.8
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 5.6e-113 412.1 401 70.8
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.8e-112 409.8 401 70.1
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 4.7e-112 409.1 526 56.1
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.4e-111 406.8 426 58.5
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 6.8e-111 405.2 402 69.2
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 2.0e-110 403.7 351 76.9
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.9e-109 399.8 402 59.7
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.4e-108 397.5 430 56.0
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 2.1e-107 393.7 401 61.1
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 4.6e-107 392.5 402 63.7
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.5e-105 387.5 399 65.4
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 4.4e-102 375.9 389 64.3
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 4.9e-101 372.5 422 55.2
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 7.1e-100 368.6 400 61.8
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.1e-97 361.3 372 57.0
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 1.6e-96 357.5 393 53.2
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.1e-95 354.8 407 54.3
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.8e-95 354.0 444 45.7
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 1.2e-91 341.3 314 78.0
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.6e-91 339.3 298 73.8
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 4.3e-89 332.8 395 51.4
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 2.6e-86 323.6 257 72.0
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 7.6e-86 322.0 386 49.5
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 3.8e-85 319.7 257 71.6
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 3.0e-82 310.1 313 62.6
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 3.9e-82 309.7 249 72.3
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 6.7e-82 308.9 385 47.5
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 8.2e-80 302.0 335 56.1
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 7.9e-75 285.4 366 48.4
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.6e-70 270.4 423 44.4
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 9.7e-65 251.9 398 39.7
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 5.3e-63 246.1 198 59.6
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.2e-60 235.7 293 66.6
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.4e-58 231.5 194 60.8
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 3.0e-58 230.3 298 45.6
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 6.7e-58 229.2 302 45.4
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 2.8e-56 223.8 394 43.9
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 3.8e-45 186.8 105 81.0
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.6e-43 180.3 105 77.1
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.3e-42 177.6 129 65.1
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.3e-40 171.8 136 61.8
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 4.1e-39 166.8 88 83.0
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 1.9e-36 157.9 106 68.9
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 8.0e-35 152.5 371 34.8
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 4.8e-32 143.3 94 74.5
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.4e-31 141.7 90 80.0
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-30 137.9 104 69.2
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 5.9e-30 136.3 181 40.9
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.7e-27 126.7 297 36.0
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 2.3e-26 124.4 150 48.0
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 5.2e-26 123.2 79 77.2
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 1.7e-24 118.2 80 68.8
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 7.0e-23 112.8 86 64.0
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 2.0e-22 111.3 120 65.0
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 2.7e-22 110.9 56 82.1
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.8e-19 100.9 164 36.0
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 5.2e-18 96.7 50 76.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 1.3e-16 92.0 65 61.5
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.9e-16 90.9 63 63.5
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 3.2e-15 87.4 44 81.8
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 9.2e-15 85.9 45 77.8
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.2e-14 85.5 43 81.4
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 2.0e-14 84.7 43 81.4
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.9e-13 80.5 45 73.3
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 5.6e-12 76.6 47 68.1
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 4.7e-11 73.6 40 80.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 4.7e-11 73.6 40 80.0
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.4e-10 72.0 45 66.7
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 5.2e-10 70.1 38 76.3
C03p42670 Brassica napus HOM05D003606 ORTHO05D016710 8.3e-08 62.8 140 31.4
C03p67300 Brassica napus HOM05D003606 ORTHO05D016710 8.3e-08 62.8 140 31.4
BolSC21t60295H Brassica oleracea HOM05D003606 ORTHO05D016710 8.3e-08 62.8 140 31.4
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 8.3e-08 62.8 40 62.5
Actinidia18910 Actinidia chinensis HOM05D002288 ORTHO05D002894 1.6e-06 58.5 79 36.7
BolC2t06237H Brassica oleracea HOM05D003606 ORTHO05D016710 1.6e-06 58.5 140 32.1
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 2.7e-06 57.8 58 46.6
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 3.5e-06 57.4 72 40.3
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 4.6e-06 57.0 41 56.1
TWI12G0929 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 4.6e-06 57.0 71 42.3
Nn4g24508 Nelumbo nucifera HOM05D002288 ORTHO05D002894 6.0e-06 56.6 79 35.4


User provided reference genes

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