Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52545 Arabidopsis thaliana HOM05D000457 ORTHO05D008967 2.7e-36 154.8 80 100.0
AL8G27010 Arabidopsis lyrata HOM05D000457 ORTHO05D008967 5.3e-32 140.6 78 93.6
Thhalv10014901m.g Eutrema salsugineum HOM05D000457 ORTHO05D008967 6.1e-28 127.1 80 87.5
Sp6g14750 Schrenkiella parvula HOM05D000457 ORTHO05D008967 7.9e-28 126.7 79 87.3
BcaB05g21965 Brassica carinata HOM05D000457 ORTHO05D008967 1.0e-27 126.3 81 86.4
BNapus_Darmor_BZH_scaffold_232p00100 Brassica napus HOM05D000457 ORTHO05D008967 1.1e-26 122.9 79 84.8
C02p19570 Brassica napus HOM05D000457 ORTHO05D008967 1.1e-26 122.9 79 84.8
Carub.0008s1267 Capsella rubella HOM05D000457 ORTHO05D008967 2.0e-26 122.1 83 84.3
BcaC03g14521 Brassica carinata HOM05D000457 ORTHO05D008967 2.5e-26 121.7 79 84.8
BcaC03g14522 Brassica carinata HOM05D000457 ORTHO05D008967 2.5e-26 121.7 79 84.8
BolC2t08094H Brassica oleracea HOM05D000457 ORTHO05D008967 2.5e-26 121.7 79 84.8
A02p11750 Brassica napus HOM05D000457 ORTHO05D008967 4.3e-26 120.9 79 83.5
BraA02t06240Z Brassica rapa HOM05D000457 ORTHO05D008967 4.3e-26 120.9 79 83.5
Aa31LG3G8900 Aethionema arabicum HOM05D000457 ORTHO05D008967 3.4e-23 111.3 78 78.2
Ciclev10006167m.g Citrus clementina HOM05D000457 ORTHO05D008967 5.3e-16 87.4 78 66.7
THA.LOC104811961 Tarenaya hassleriana HOM05D000457 ORTHO05D008967 9.1e-16 86.7 80 62.5
Cpa.g.sc107.101 Carica papaya HOM05D000457 ORTHO05D008967 2.0e-15 85.5 69 65.2
CiPaw.06G002900 Carya illinoinensis HOM05D000457 ORTHO05D008967 3.5e-15 84.7 79 59.5
Sc19g0001310 Simmondsia chinensis HOM05D000457 ORTHO05D008967 3.8e-14 81.3 79 54.4
Lj8C18T9 Lonicera japonica HOM05D000457 ORTHO05D008967 5.0e-14 80.9 78 56.4
Thecc.03G183200 Theobroma cacao HOM05D000457 ORTHO05D008967 6.5e-14 80.5 81 60.5
Thecc.K0007400 Theobroma cacao HOM05D000457 ORTHO05D008967 6.5e-14 80.5 81 60.5
Dinv28392 Davidia involucrata HOM05D000457 ORTHO05D003394 1.1e-13 79.7 78 61.5
Aqoxy7G00247 Aquilegia oxysepala HOM05D000457 ORTHO05D008967 1.9e-13 79.0 69 63.8
Cfa016281 Carpinus fangiana HOM05D000457 ORTHO05D008967 4.2e-13 77.8 79 59.5
Haze_00037 Corylus avellana HOM05D000457 ORTHO05D008967 4.2e-13 77.8 79 59.5
CANSAT11G1185 Cannabis sativa HOM05D000457 ORTHO05D008967 9.4e-13 76.6 78 59.0
Dinv41815 Davidia involucrata HOM05D000457 ORTHO05D008967 9.4e-13 76.6 78 60.3
QL09p012992 Quercus lobata HOM05D000457 ORTHO05D008967 9.4e-13 76.6 79 59.5
MD07G1278200 Malus domestica HOM05D000457 ORTHO05D008967 1.2e-12 76.3 78 59.0
EL10Ac3g05431 Beta vulgaris HOM05D000457 ORTHO05D008967 2.7e-12 75.1 78 56.4
Cc02_g02450 Coffea canephora HOM05D000457 ORTHO05D008967 2.7e-12 75.1 78 56.4
Manes.06G151800 Manihot esculenta HOM05D000457 ORTHO05D008967 2.7e-12 75.1 78 60.3
Ca_25424_v3 Cicer arietinum L. HOM05D000457 ORTHO05D008967 3.6e-12 74.7 78 53.8
MD01G1207500 Malus domestica HOM05D000457 ORTHO05D008967 3.6e-12 74.7 78 59.0
Duzib068G0228 Durio zibethinus HOM05D000457 ORTHO05D008967 6.1e-12 73.9 79 60.8
CSS0021842 Camellia sinensis var. sinensis HOM05D000457 ORTHO05D008967 8.0e-12 73.6 78 57.7
Eucgr.K00291 Eucalyptus grandis HOM05D000457 ORTHO05D008967 1.0e-11 73.2 78 57.7
Prupe.2G300100 Prunus persica HOM05D000457 ORTHO05D008967 1.8e-11 72.4 78 57.7
Lalb_Chr03g0034781 Lupinus albus HOM05D000457 ORTHO05D008967 2.3e-11 72.0 78 55.1
FvH4_7g30160 Fragaria vesca HOM05D000457 ORTHO05D008967 3.0e-11 71.6 78 61.5
FAN06G1096 Fragaria x ananassa HOM05D000457 ORTHO05D008967 3.0e-11 71.6 78 61.5
Psat0s823g0040 Pisum sativum HOM05D000457 ORTHO05D008967 3.0e-11 71.6 78 55.1
AUR62031413 Chenopodium quinoa HOM05D000457 ORTHO05D008967 4.0e-11 71.2 80 53.8
Nn5g28157 Nelumbo nucifera HOM05D000457 ORTHO05D008967 4.0e-11 71.2 78 53.8
Sabra04G0052800 Salix brachista HOM05D000457 ORTHO05D008967 4.0e-11 71.2 78 57.7
TAR374G0573 Trochodendron aralioides HOM05D000457 ORTHO05D008967 4.0e-11 71.2 78 57.7
AUR62021132 Chenopodium quinoa HOM05D000457 ORTHO05D003394 5.2e-11 70.9 78 59.0
ClCG01G000950 Citrullus lanatus HOM05D000457 ORTHO05D008967 5.2e-11 70.9 79 54.4
Duzib084G1351 Durio zibethinus HOM05D000457 ORTHO05D008967 5.2e-11 70.9 78 57.7
FAN03G1511 Fragaria x ananassa HOM05D000457 ORTHO05D008967 5.2e-11 70.9 78 60.3
RcHm_v2.0_Chr1g0378211 Rosa chinensis HOM05D000457 ORTHO05D008967 5.2e-11 70.9 79 58.2
Atru.chr1.382 Acer truncatum HOM05D000457 ORTHO05D008967 6.7e-11 70.5 78 56.4
QL09p013029 Quercus lobata HOM05D000457 ORTHO05D008967 6.7e-11 70.5 79 57.0
Potri.004G079400 Populus trichocarpa HOM05D000457 ORTHO05D008967 8.8e-11 70.1 78 56.4
Glyma.16G179700 Glycine max HOM05D000457 ORTHO05D008967 1.5e-10 69.3 79 53.2
Phvul.004G109700 Phaseolus vulgaris HOM05D000457 ORTHO05D008967 1.5e-10 69.3 79 54.4
TPR.G33500 Trifolium pratense HOM05D000457 ORTHO05D008967 1.5e-10 69.3 78 53.8
Atru.chr1.366 Acer truncatum HOM05D000457 ORTHO05D008967 2.0e-10 68.9 77 55.8
Atru.ctg97_1.13 Acer truncatum HOM05D000457 ORTHO05D008967 2.0e-10 68.9 77 55.8
COL.COLO4_10064 Corchorus olitorius HOM05D000457 ORTHO05D008967 2.0e-10 68.9 79 55.7
CsaV3_5G001090 Cucumis sativus L. HOM05D000457 ORTHO05D008967 2.0e-10 68.9 79 54.4
FAN01G0381 Fragaria x ananassa HOM05D000457 ORTHO05D008967 2.0e-10 68.9 78 60.3
SalBow2G2252 Salvia bowleyana HOM05D000457 ORTHO05D008967 2.0e-10 68.9 79 55.7
TWI23G0899 Tripterygium wilfordii HOM05D000457 ORTHO05D008967 2.0e-10 68.9 78 57.7
MELO3C005837.2 Cucumis melo HOM05D000457 ORTHO05D008967 2.6e-10 68.6 79 54.4
Medtr0022s0360 Medicago truncatula HOM05D000457 ORTHO05D008967 2.6e-10 68.6 79 51.9
Medtr6g048060 Medicago truncatula HOM05D000457 ORTHO05D008967 2.6e-10 68.6 79 51.9
SalBow2G1735 Salvia bowleyana HOM05D000457 ORTHO05D008967 2.6e-10 68.6 79 55.7
VMungo0464G2072 Vigna mungo HOM05D000457 ORTHO05D008967 2.6e-10 68.6 79 53.2
Actinidia34151 Actinidia chinensis HOM05D000457 ORTHO05D008967 4.4e-10 67.8 78 55.1
arahy.Tifrunner.gnm1.ann1.82SWC8 Arachis hypogaea HOM05D000457 ORTHO05D008967 4.4e-10 67.8 77 50.6
arahy.Tifrunner.gnm1.ann1.E24S63 Arachis hypogaea HOM05D000457 ORTHO05D008967 4.4e-10 67.8 77 50.6
MSTRG.8715 Avicennia marina HOM05D000457 ORTHO05D008967 4.4e-10 67.8 79 55.7
Gohir.D11G011001 Gossypium hirsutum HOM05D000457 ORTHO05D008967 4.4e-10 67.8 79 54.4
Gorai.007G012500 Gossypium raimondii HOM05D000457 ORTHO05D008967 4.4e-10 67.8 79 54.4
Ah.07g206630 Amaranthus hybridus HOM05D000457 ORTHO05D008967 7.5e-10 67.0 78 52.6
Nitab4.5_0000572g0130 Nicotiana tabacum HOM05D000457 ORTHO05D008967 9.7e-10 66.6 76 51.3
Peaxi162Scf00444g00131 Petunia axillaris HOM05D000457 ORTHO05D008967 9.7e-10 66.6 79 53.2
Gohir.A11G011800 Gossypium hirsutum HOM05D000457 ORTHO05D008967 1.7e-09 65.9 79 53.2
Glyma.09G133100 Glycine max HOM05D000457 ORTHO05D008967 2.2e-09 65.5 79 51.9
Migut.F01090 Erythranthe guttata HOM05D000457 ORTHO05D008967 2.8e-09 65.1 80 51.2
Hma1.2p1_0274F.1_g110210 Hydrangea macrophylla HOM05D000457 ORTHO05D008967 2.8e-09 65.1 78 51.3
GSVIVG01028871001 Vitis vinifera HOM05D000457 ORTHO05D008967 2.8e-09 65.1 79 50.6
Lj2g0015355 Lotus japonicus HOM05D000457 ORTHO05D008967 3.7e-09 64.7 78 51.3
Hund04782 Selenicereus undatus HOM05D000457 ORTHO05D008967 3.7e-09 64.7 79 51.9
Nitab4.5_0000084g0410 Nicotiana tabacum HOM05D000457 ORTHO05D008967 4.8e-09 64.3 78 52.6
Rhsim03G0190500 Rhododendron simsii HOM05D000457 ORTHO05D008967 4.8e-09 64.3 79 57.0
MBI11_g04753_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D008967 6.3e-09 63.9 80 47.5
Nitab4.5_0000572g0080 Nicotiana tabacum HOM05D000457 ORTHO05D008967 6.3e-09 63.9 75 50.7
Sed0009016 Sechium edule HOM05D000457 ORTHO05D008967 8.2e-09 63.5 79 54.4
MBI18_g45289_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D008967 1.4e-08 62.8 80 47.5
PGR142G3689 Punica granatum HOM05D000457 ORTHO05D008967 1.8e-08 62.4 79 51.9
Nitab4.5_0000084g0330 Nicotiana tabacum HOM05D000457 ORTHO05D008967 2.4e-08 62.0 79 51.9
vmacro06631 Vaccinium macrocarpon HOM05D000457 ORTHO05D008967 2.4e-08 62.0 78 56.4
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 9.1e-08 60.1 79 50.6
PSO782G3743 Papaver somniferum HOM05D000457 ORTHO05D008967 1.2e-07 59.7 82 48.8
PSO478G0698 Papaver somniferum HOM05D000457 ORTHO05D008967 3.5e-07 58.2 82 47.6
PSO478G0375 Papaver somniferum HOM05D000457 ORTHO05D008967 1.0e-06 56.6 74 50.0
FAN06G1897 Fragaria x ananassa HOM05D000457 ORTHO05D008967 1.3e-06 56.2 79 51.9
DCAR_010660 Daucus carota HOM05D000457 ORTHO05D008967 2.2e-06 55.5 80 46.2
Lsat_1_v5_gn_8_6640 Lactuca sativa HOM05D000457 ORTHO05D008967 2.9e-06 55.1 75 44.0


User provided reference genes

Program Settings