Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 0.0e+00 1114.0 591 100.0
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.5e-251 872.1 598 80.8
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 3.7e-183 645.6 572 69.2
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 6.4e-183 644.8 648 63.6
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 8.1e-178 627.9 635 62.5
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 6.5e-143 511.9 467 68.5
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.0e-132 476.5 628 54.9
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 1.6e-117 427.6 608 51.0
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 5.7e-115 419.1 625 48.3
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 9.7e-115 418.3 602 51.7
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 3.7e-114 416.4 608 49.2
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 1.8e-113 414.1 608 49.0
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.1e-105 388.3 620 46.6
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 4.0e-100 369.8 381 63.0
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.3e-58 231.9 446 42.2
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 6.0e-56 223.0 670 34.6
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 3.3e-54 217.2 747 34.4
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 6.4e-50 203.0 702 34.0
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 9.3e-49 199.1 706 33.1
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 1.2e-48 198.7 659 32.9
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 4.6e-48 196.8 426 40.6
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.5e-46 191.8 442 38.5
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 7.4e-46 189.5 690 32.6
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 6.2e-45 186.4 728 32.0
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 1.5e-43 181.8 426 39.2
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 3.4e-43 180.6 748 30.7
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 4.5e-43 180.3 708 31.5
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-42 178.7 586 34.6
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 1.7e-42 178.3 644 30.9
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.9e-42 176.8 726 31.1
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 6.4e-42 176.4 739 30.7
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 2.4e-41 174.5 424 39.9
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.4e-41 174.5 689 31.3
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 3.2e-41 174.1 424 39.9
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 5.5e-41 173.3 628 32.5
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 7.1e-41 172.9 426 38.5
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 1.6e-40 171.8 636 31.1
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.1e-40 171.4 668 30.4
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 2.7e-40 171.0 426 38.0
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 2.7e-40 171.0 733 31.5
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 6.0e-40 169.9 640 31.2
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.0e-39 169.1 640 30.8
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.8e-39 168.3 668 29.5
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 3.9e-39 167.2 639 30.8
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 1.5e-38 165.2 723 31.1
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.3e-38 164.1 681 29.7
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.3e-38 164.1 678 30.1
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 4.3e-38 163.7 727 31.9
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.6e-38 163.3 681 29.5
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 7.4e-38 162.9 681 29.5
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 7.4e-38 162.9 734 30.4
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 9.6e-38 162.5 662 31.4
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 9.6e-38 162.5 612 30.7
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.3e-37 162.2 625 31.4
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.1e-37 161.4 678 31.3
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.7e-37 160.6 680 30.0
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.1e-36 159.1 637 32.0
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.1e-36 159.1 750 30.4
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.4e-36 158.7 449 38.5
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 1.4e-36 158.7 668 30.5
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.8e-36 158.3 677 30.4
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.8e-36 158.3 669 30.3
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 6.9e-36 156.4 616 31.5
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.2e-35 155.6 685 29.6
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.3e-34 152.1 666 30.9
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.2e-34 151.4 639 30.7
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.2e-34 151.4 646 30.8
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 4.9e-34 150.2 691 29.8
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 6.5e-34 149.8 637 30.6
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.1e-33 149.1 743 29.2
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.4e-33 148.7 681 30.2
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 2.5e-33 147.9 596 29.2
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.2e-33 147.5 707 28.7
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 4.2e-33 147.1 703 28.3
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 7.1e-33 146.4 653 30.6
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 9.3e-33 146.0 576 30.2
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 1.6e-32 145.2 667 28.8
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 2.7e-32 144.4 668 29.6
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 3.5e-32 144.1 663 29.0
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 1.3e-31 142.1 710 30.6
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 3.0e-31 141.0 651 28.7
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.9e-30 138.3 733 28.1
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 5.7e-30 136.7 494 34.2
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.6e-29 135.2 570 31.4
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.6e-29 135.2 669 28.8
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 2.1e-29 134.8 700 29.1
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 2.8e-29 134.4 384 40.4
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 4.8e-29 133.7 679 28.7
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 6.3e-29 133.3 663 28.4
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 8.2e-29 132.9 733 28.9
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 8.2e-29 132.9 672 29.2
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.8e-28 131.7 743 28.5
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 2.4e-28 131.3 633 29.5
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 4.1e-28 130.6 683 26.9
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 4.1e-28 130.6 736 29.9
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 4.1e-28 130.6 625 29.4
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 2.0e-27 128.3 724 30.0
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 3.4e-27 127.5 450 33.3
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.4e-27 127.5 714 29.1
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 7.6e-27 126.3 707 29.4
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 7.6e-27 126.3 412 33.7
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 1.0e-26 125.9 702 27.9
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 1.7e-26 125.2 755 29.0
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 2.9e-26 124.4 659 28.1
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 1.1e-25 122.5 639 28.2
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 1.1e-25 122.5 635 28.5
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 1.1e-25 122.5 671 28.3
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.4e-25 122.1 658 28.7
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.9e-25 121.7 698 28.2
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 2.5e-25 121.3 600 29.7
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 7.2e-25 119.8 688 29.2
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 7.2e-25 119.8 765 26.5
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.6e-24 118.6 562 30.1
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 3.6e-24 117.5 655 26.9
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 6.1e-24 116.7 687 26.2
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 6.1e-24 116.7 674 27.0
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 1.3e-23 115.5 683 29.1
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.8e-23 115.2 718 27.9
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 8.7e-23 112.8 708 26.7
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.5e-22 111.3 622 28.3
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 3.3e-22 110.9 668 27.8
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.6e-21 108.6 561 29.9
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.8e-21 107.8 775 27.2
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 3.7e-21 107.5 572 27.8
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 4.8e-21 107.1 649 27.9
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 1.1e-20 105.9 429 32.9
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.0e-19 101.7 775 26.2
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 2.6e-19 101.3 683 27.5
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 4.5e-19 100.5 618 26.9
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 5.9e-19 100.1 704 25.0
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 2.2e-18 98.2 679 27.0
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.5e-17 94.7 665 26.3
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 7.2e-17 93.2 597 27.6
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.6e-16 92.0 421 28.3
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 2.1e-16 91.7 237 34.6
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 2.7e-16 91.3 603 28.0
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 6.1e-16 90.1 323 33.1
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 1.8e-15 88.6 189 40.2
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 2.3e-15 88.2 349 30.4
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 3.0e-15 87.8 586 27.8
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 8.8e-15 86.3 657 26.6
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-14 85.9 341 31.1
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.5e-14 85.5 619 27.1
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.0e-14 85.1 683 24.7
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 1.3e-13 82.4 621 26.2
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 2.2e-13 81.6 276 33.0
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 3.7e-13 80.9 608 25.3
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 4.8e-13 80.5 258 32.2
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 8.2e-13 79.7 363 28.4
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.8e-12 78.6 277 32.5
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 2.6e-11 74.7 349 29.5
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 2.6e-11 74.7 349 29.5
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.3e-10 72.4 601 25.1
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 8.5e-10 69.7 573 25.1
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.1e-09 69.3 258 34.1
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.1e-09 69.3 399 26.3
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.4e-09 68.9 265 30.2
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 3.6e-08 64.3 331 28.7
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 9.7e-06 56.2 529 24.8


User provided reference genes

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