Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 2.0e-114 416.0 246 100.0
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 3.0e-102 375.6 246 92.3
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 2.5e-101 372.5 248 89.9
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 2.2e-100 369.4 246 87.0
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.4e-99 366.7 247 89.1
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.4e-99 365.9 246 89.0
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 8.5e-97 357.5 248 83.9
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.1e-96 357.1 247 86.6
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 8.8e-94 347.4 247 78.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 2.0e-93 346.3 248 79.0
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 5.7e-93 344.7 248 78.6
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 7.4e-93 344.4 247 78.1
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.6e-90 336.7 247 76.9
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.4e-83 313.5 245 73.5
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.9e-64 250.0 249 59.8
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.3e-64 248.8 257 64.2
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.5e-64 247.7 257 63.8
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.2e-63 247.3 246 62.2
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.6e-63 246.9 255 64.7
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.1e-63 246.5 257 63.8
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 6.1e-63 245.0 254 60.2
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 6.1e-63 245.0 256 59.4
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.4e-62 243.8 260 59.2
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 2.3e-62 243.0 253 65.2
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 4.0e-62 242.3 250 60.0
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.8e-62 241.5 259 59.1
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 8.9e-62 241.1 259 65.3
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 8.9e-62 241.1 250 59.6
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.2e-61 240.7 251 66.9
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.2e-61 240.7 258 58.5
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.5e-61 240.4 259 56.4
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.6e-61 239.6 254 58.3
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 3.4e-61 239.2 256 58.2
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.4e-61 238.8 259 56.8
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.7e-61 238.4 249 59.8
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 7.5e-61 238.0 251 63.3
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 1.3e-60 237.3 260 60.0
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.7e-60 235.7 251 59.0
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.9e-60 235.3 258 56.6
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 4.9e-60 235.3 254 57.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.4e-60 235.0 256 55.5
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 6.4e-60 235.0 259 56.4
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 6.4e-60 235.0 244 66.4
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 6.4e-60 235.0 252 58.3
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 8.3e-60 234.6 258 58.5
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-59 234.2 258 56.6
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.1e-59 234.2 254 56.3
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 1.4e-59 233.8 260 57.7
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.8e-59 233.4 257 56.8
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.4e-59 233.0 241 57.3
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 3.2e-59 232.6 242 56.6
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 4.1e-59 232.3 247 63.6
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 5.4e-59 231.9 155 80.6
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 5.4e-59 231.9 245 65.7
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 7.0e-59 231.5 252 57.5
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 7.0e-59 231.5 242 58.3
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.2e-59 231.1 290 51.4
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.2e-58 230.7 246 58.1
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 3.5e-58 229.2 252 55.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 5.9e-58 228.4 255 56.1
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 5.9e-58 228.4 242 58.3
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.0e-57 227.6 239 56.5
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 1.0e-57 227.6 253 57.3
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.0e-57 227.6 248 56.9
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.3e-57 227.3 256 55.5
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.3e-57 227.3 272 54.8
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.3e-57 226.5 250 61.6
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 3.0e-57 226.1 250 56.4
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.0e-57 226.1 258 55.4
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 3.0e-57 226.1 252 58.7
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.1e-56 224.2 255 55.7
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.1e-56 224.2 243 57.2
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.1e-56 224.2 252 56.0
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.5e-56 223.8 278 52.9
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.5e-56 223.8 250 63.6
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 3.3e-56 222.6 256 55.5
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 3.3e-56 222.6 253 55.7
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 4.3e-56 222.2 250 55.6
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 5.6e-56 221.9 255 55.3
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 5.6e-56 221.9 249 60.2
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 7.3e-56 221.5 255 54.5
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 2.1e-55 219.9 258 55.0
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.1e-55 219.9 257 55.6
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.1e-55 219.9 153 76.5
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 3.6e-55 219.2 246 56.9
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 3.6e-55 219.2 255 54.1
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 4.7e-55 218.8 255 53.7
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 8.0e-55 218.0 154 77.9
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.0e-54 217.6 262 54.6
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.4e-54 217.2 153 75.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 3.1e-54 216.1 262 54.2
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 4.0e-54 215.7 258 54.7
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.2e-54 215.3 239 57.3
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 5.2e-54 215.3 294 49.7
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.8e-54 214.9 257 53.7
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 6.8e-54 214.9 259 60.2
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.5e-53 213.8 267 52.1
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 9.8e-53 211.1 269 51.3
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.7e-52 210.3 243 56.0
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 4.9e-52 208.8 242 53.3
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.4e-51 207.2 249 51.4
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.1e-51 205.7 309 51.5
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 7.0e-51 204.9 171 68.4
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 9.2e-51 204.5 257 48.6
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.0e-50 203.4 228 56.1
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.0e-50 203.4 244 50.4
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 3.5e-50 202.6 253 51.4
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 7.8e-50 201.4 244 50.0
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 5.0e-49 198.7 254 50.8
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 3.3e-48 196.1 222 55.9
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 3.1e-46 189.5 254 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 8.9e-46 188.0 157 64.3
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 3.7e-44 182.6 249 49.8
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 4.9e-44 182.2 108 89.8
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.9e-43 180.3 216 55.1
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 5.4e-43 178.7 145 64.1
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.2e-42 177.6 223 49.8
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.1e-40 171.0 247 58.7
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 8.1e-39 164.9 245 44.9
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 3.1e-38 162.9 137 62.8
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.6e-34 150.6 177 54.8
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.8e-31 139.8 96 74.0
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 6.2e-31 138.7 98 72.4
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 5.2e-30 135.6 248 41.5
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 5.8e-29 132.1 218 44.0
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 9.6e-24 114.8 270 46.7
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.4e-22 110.2 197 45.7
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 2.6e-21 106.7 123 48.0
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 5.8e-21 105.5 247 44.5
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 5.8e-21 105.5 247 44.5
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.2e-20 103.6 174 45.4
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 1.4e-19 100.9 105 57.1
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 3.5e-18 96.3 208 43.3
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.6e-18 95.9 184 44.0
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 3.0e-17 93.2 156 46.2
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 6.7e-17 92.0 65 70.8
BraA10t43048Z Brassica rapa HOM05D005135 ORTHO05D005810 1.5e-16 90.9 249 42.6
A10p09670 Brassica napus HOM05D005135 ORTHO05D005810 4.8e-15 85.9 96 75.0
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.8e-15 85.9 55 81.8
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.3e-14 82.4 55 74.5
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.4e-11 73.6 67 65.7
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 5.5e-11 72.4 159 39.0
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 5.5e-11 72.4 63 57.1
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 2.7e-10 70.1 174 32.2
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.7e-07 59.7 40 72.5


User provided reference genes

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