Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1882.1 973 100.0
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1727.6 978 90.6
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1646.3 982 87.2
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1596.6 980 83.7
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1587.0 979 83.9
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1568.1 978 81.8
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1520.4 977 79.9
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1518.8 977 79.8
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1496.9 977 78.5
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1496.9 977 78.5
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1494.2 975 78.3
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1493.8 977 80.7
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1488.0 977 80.6
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1461.8 978 79.3
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1439.5 975 76.3
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1422.1 977 78.0
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 0.0e+00 1093.2 876 64.6
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 2.0e-282 976.1 669 76.7
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 1.6e-279 966.5 980 52.9
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 5.8e-274 948.0 985 53.5
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 1.3e-273 946.8 966 53.2
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.0e-270 937.2 853 57.2
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.5e-269 933.3 1016 53.1
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 1.3e-268 930.2 1008 52.0
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 1.6e-268 929.9 1044 50.1
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 2.1e-268 929.5 1029 51.0
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 4.0e-267 925.2 980 52.3
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 5.3e-267 924.9 962 53.6
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 2.0e-266 922.9 937 52.9
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 1.3e-265 920.2 953 52.3
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 1.1e-264 917.1 987 51.9
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.4e-264 916.8 990 51.1
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.9e-264 916.4 955 53.4
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 1.9e-264 916.4 987 51.8
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 7.9e-263 911.0 985 52.7
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 1.0e-262 910.6 998 51.1
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 1.3e-262 910.2 968 53.1
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 1.8e-262 909.8 1034 50.3
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.3e-262 909.4 876 55.6
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 5.1e-262 908.3 1049 51.1
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 7.4e-261 904.4 953 54.8
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 2.1e-260 902.9 954 53.4
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 2.8e-260 902.5 883 54.6
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.7e-260 902.1 976 51.5
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 8.1e-260 901.0 1042 49.7
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 1.4e-259 900.2 954 51.6
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 9.0e-259 897.5 883 54.7
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.2e-258 897.1 976 51.3
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 2.0e-258 896.3 1000 50.8
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 4.5e-258 895.2 961 52.3
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 7.6e-258 894.4 978 51.1
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 1.0e-257 894.0 976 51.1
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.3e-257 893.6 986 50.5
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.2e-257 892.9 886 54.3
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 4.9e-257 891.7 882 54.8
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 1.4e-256 890.2 1000 50.2
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 7.1e-256 887.9 986 50.2
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 2.7e-255 885.9 1006 50.4
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 3.7e-252 875.5 883 52.9
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.3e-251 871.7 862 54.8
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 1.5e-250 870.2 1056 50.8
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 3.4e-250 869.0 927 52.1
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 5.9e-250 868.2 973 48.3
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.9e-249 865.9 927 52.0
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 8.5e-249 864.4 970 51.8
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.6e-247 860.1 1030 49.6
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 1.3e-246 857.1 1011 49.2
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 3.9e-246 855.5 974 49.3
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 8.7e-246 854.4 890 51.5
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.5e-245 852.8 892 51.2
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 9.7e-245 850.9 1046 47.4
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 1.6e-244 850.1 977 48.9
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 3.1e-243 845.9 972 49.2
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 9.1e-243 844.3 984 49.9
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 1.2e-242 844.0 946 50.6
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.5e-242 843.6 971 51.5
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.5e-241 838.2 1028 48.0
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 2.1e-239 833.2 888 51.5
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 2.7e-239 832.8 965 51.5
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.4e-238 830.5 956 51.6
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 5.1e-238 828.6 888 52.5
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 6.9e-235 818.1 867 53.3
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 3.4e-234 815.8 984 48.0
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 7.9e-231 804.7 862 52.4
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 2.0e-229 800.0 849 51.2
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 2.0e-229 800.0 871 50.1
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 7.4e-229 798.1 864 50.0
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 2.2e-228 796.6 975 45.4
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 2.2e-228 796.6 855 50.5
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.0e-222 777.7 1025 45.9
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 7.0e-219 765.0 979 44.1
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 2.5e-216 756.5 860 48.7
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.2e-215 754.2 1025 44.3
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 5.7e-213 745.3 852 46.9
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.4e-211 740.0 803 50.8
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 3.1e-211 739.6 977 47.5
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.6e-207 726.1 718 54.7
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 6.8e-206 721.8 813 49.4
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.7e-201 707.2 979 42.4
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.7e-196 690.6 781 48.8
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 2.1e-178 630.6 555 56.8
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.3e-177 627.9 608 52.1
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-177 627.9 543 58.0
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.7e-175 619.4 550 57.5
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 5.2e-166 589.3 622 50.2
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 8.4e-156 555.4 404 66.6
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 5.5e-123 446.4 483 47.6
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.0e-117 427.9 402 56.0
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 3.6e-90 337.4 479 50.1
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 2.4e-70 271.6 416 50.0
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.6e-69 268.9 516 37.0
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.1e-53 215.3 297 41.1
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.6e-42 179.1 157 52.2
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.6e-42 179.1 470 28.5
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.3e-41 174.1 470 28.1
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.3e-41 174.1 470 28.1
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-39 169.5 376 29.8
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 7.9e-37 160.2 121 63.6
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 7.9e-37 160.2 121 63.6
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 6.7e-36 157.1 490 27.3
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.3e-31 142.9 199 40.7
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.0e-28 133.3 329 29.5
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 2.5e-27 128.6 390 28.7
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.8e-18 98.6 488 24.6
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 6.9e-17 94.0 482 24.9
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.0e-16 92.4 157 33.8
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.3e-12 79.0 60 70.0
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.2e-08 66.6 85 49.4
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 2.6e-08 65.5 117 31.6
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 5.0e-07 61.2 312 22.8
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 8.5e-07 60.5 354 23.7
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 1.1e-06 60.1 116 30.2
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 1.1e-06 60.1 116 30.2
Nitab4.5_0000049g0070 Nicotiana tabacum HOM05D002537 ORTHO05D002751 1.4e-06 59.7 116 31.0
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 1.9e-06 59.3 118 29.7
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 1.9e-06 59.3 191 27.2
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.9e-06 59.3 191 27.2
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 1.9e-06 59.3 82 36.6
AagrBONN_evm.TU.Sc2ySwM_117.2665 Anthoceros agrestis HOM05D003725 ORTHO05D004294 2.5e-06 58.9 121 30.6
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 2.5e-06 58.9 119 31.1
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 2.5e-06 58.9 118 38.1
Haze_06001 Corylus avellana HOM05D003725 ORTHO05D004294 3.2e-06 58.5 133 27.1
PGR119G1955 Punica granatum HOM05D002537 ORTHO05D002751 3.2e-06 58.5 194 26.3
RcHm_v2.0_Chr4g0428941 Rosa chinensis HOM05D002537 ORTHO05D002751 3.2e-06 58.5 146 28.1
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 3.2e-06 58.5 128 29.7
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 3.2e-06 58.5 72 37.5
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 3.2e-06 58.5 72 36.1
CBR_g54961 Chara braunii HOM05D000601 ORTHO05D000407 4.2e-06 58.2 116 31.9
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 4.2e-06 58.2 78 34.6
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 4.2e-06 58.2 124 27.4
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 4.2e-06 58.2 72 34.7
CiPaw.06G109100 Carya illinoinensis HOM05D002537 ORTHO05D002751 5.5e-06 57.8 117 32.5
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 5.5e-06 57.8 139 30.9
Cfa000740 Carpinus fangiana HOM05D003725 ORTHO05D004294 7.2e-06 57.4 180 25.0
CBR_g21012 Chara braunii HOM05D000601 ORTHO05D000407 7.2e-06 57.4 115 32.2
CBR_g32206 Chara braunii HOM05D000601 ORTHO05D000407 7.2e-06 57.4 116 31.9
Nn4g24804 Nelumbo nucifera HOM05D003725 ORTHO05D004294 7.2e-06 57.4 72 36.1
Sabra01G0046500 Salix brachista HOM05D002537 ORTHO05D002751 7.2e-06 57.4 120 30.0
PGSC0003DMG400012915 Solanum tuberosum HOM05D003725 ORTHO05D004294 7.2e-06 57.4 88 34.1
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 9.4e-06 57.0 117 29.1
CBR_g34592 Chara braunii HOM05D000601 ORTHO05D000407 9.4e-06 57.0 123 31.7
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 9.4e-06 57.0 195 25.1
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 9.4e-06 57.0 135 28.9
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 9.4e-06 57.0 124 25.8
Zm00001eb180800 Zea mays HOM05D002537 ORTHO05D002751 9.4e-06 57.0 72 37.5


User provided reference genes

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