Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51720 Arabidopsis thaliana HOM05D007196 ORTHO05D009100 1.0e-57 226.5 109 100.0
AL8G25980 Arabidopsis lyrata HOM05D007196 ORTHO05D009100 1.3e-52 209.5 110 92.7
CARHR264580 Cardamine hirsuta HOM05D007196 ORTHO05D009100 9.1e-51 203.4 110 90.9
A10p09580 Brassica napus HOM05D007196 ORTHO05D009100 5.0e-49 197.6 110 88.2
BraA10t43033Z Brassica rapa HOM05D007196 ORTHO05D009100 1.9e-48 195.7 110 87.3
BcaC04g20641 Brassica carinata HOM05D007196 ORTHO05D009100 9.4e-48 193.4 110 87.3
C09p41140 Brassica napus HOM05D007196 ORTHO05D009100 9.4e-48 193.4 110 87.3
BolC9t56992H Brassica oleracea HOM05D007196 ORTHO05D009100 9.4e-48 193.4 110 87.3
Carub.0008s1174 Capsella rubella HOM05D007196 ORTHO05D009100 9.4e-48 193.4 109 86.2
Sp6g13940 Schrenkiella parvula HOM05D007196 ORTHO05D009100 5.2e-46 187.6 110 83.6
BcaB08g35520 Brassica carinata HOM05D007196 ORTHO05D009100 6.7e-46 187.2 110 84.5
Thhalv10015074m.g Eutrema salsugineum HOM05D007196 ORTHO05D009100 1.1e-45 186.4 111 82.9
THA.LOC104811505 Tarenaya hassleriana HOM05D007196 ORTHO05D009100 7.5e-37 157.1 109 74.3
Cpa.g.sc3.256 Carica papaya HOM05D007196 ORTHO05D009100 2.2e-36 155.6 109 69.7
ECA238G2893 Erigeron canadensis HOM05D007196 ORTHO05D009100 4.5e-34 147.9 110 70.9
vmacro06759 Vaccinium macrocarpon HOM05D007196 ORTHO05D009100 1.1e-32 143.3 111 67.6
AUR62016084 Chenopodium quinoa HOM05D007196 ORTHO05D009100 1.5e-32 142.9 89 79.8
TAR375G0687 Trochodendron aralioides HOM05D007196 ORTHO05D009100 1.5e-32 142.9 114 68.4
CiPaw.03G098100 Carya illinoinensis HOM05D007196 ORTHO05D009100 1.9e-32 142.5 90 77.8
HanXRQChr07g0206311 Helianthus annuus HOM05D007196 ORTHO05D009100 1.9e-32 142.5 106 68.9
AUR62021293 Chenopodium quinoa HOM05D007196 ORTHO05D009100 3.2e-32 141.7 89 78.7
EL10Ac3g05770 Beta vulgaris HOM05D007196 ORTHO05D009100 5.5e-32 141.0 80 83.8
CSS0025032 Camellia sinensis var. sinensis HOM05D007196 ORTHO05D009100 5.5e-32 141.0 111 67.6
Cfa008239 Carpinus fangiana HOM05D007196 ORTHO05D009100 7.2e-32 140.6 129 63.6
Prupe.2G283900 Prunus persica HOM05D007196 ORTHO05D009100 7.2e-32 140.6 105 69.5
Lsat_1_v5_gn_2_129760 Lactuca sativa HOM05D007196 ORTHO05D009100 1.6e-31 139.4 113 65.5
Actinidia13526 Actinidia chinensis HOM05D007196 ORTHO05D009100 2.7e-31 138.7 111 67.6
arahy.Tifrunner.gnm1.ann1.S0TT2Y Arachis hypogaea HOM05D007196 ORTHO05D009100 3.6e-31 138.3 82 81.7
Ciclev10006560m.g Citrus clementina HOM05D007196 ORTHO05D009100 3.6e-31 138.3 88 77.3
Rhsim03G0172900 Rhododendron simsii HOM05D007196 ORTHO05D009100 3.6e-31 138.3 111 64.9
Migut.F00414 Erythranthe guttata HOM05D007196 ORTHO05D009100 8.0e-31 137.1 99 67.7
Medtr0050s0180 Medicago truncatula HOM05D007196 ORTHO05D009100 1.4e-30 136.3 79 79.7
Psat1g109280 Pisum sativum HOM05D007196 ORTHO05D009100 1.4e-30 136.3 81 77.8
TPR.G27717 Trifolium pratense HOM05D007196 ORTHO05D009100 1.4e-30 136.3 80 78.8
Duzib068G1365 Durio zibethinus HOM05D007196 ORTHO05D009100 1.8e-30 136.0 120 64.2
Eucgr.K00137 Eucalyptus grandis HOM05D007196 ORTHO05D009100 3.0e-30 135.2 111 64.9
Manes.14G032200 Manihot esculenta HOM05D007196 ORTHO05D009100 3.0e-30 135.2 110 64.5
TWI14G0139 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 3.0e-30 135.2 110 62.7
CsaV3_5G005490 Cucumis sativus L. HOM05D007196 ORTHO05D009100 4.0e-30 134.8 79 81.0
Lalb_Chr19g0131261 Lupinus albus HOM05D007196 ORTHO05D009100 4.0e-30 134.8 88 75.0
Sed0001882 Sechium edule HOM05D007196 ORTHO05D009100 4.0e-30 134.8 74 86.5
Thecc.03G163500 Theobroma cacao HOM05D007196 ORTHO05D009100 5.2e-30 134.4 79 83.5
ClCG01G005210 Citrullus lanatus HOM05D007196 ORTHO05D009100 6.8e-30 134.0 78 79.5
Lj2g0025497 Lotus japonicus HOM05D007196 ORTHO05D009100 6.8e-30 134.0 85 75.3
MELO3C005405.2 Cucumis melo HOM05D007196 ORTHO05D009100 8.8e-30 133.7 78 79.5
Dinv08000 Davidia involucrata HOM05D007196 ORTHO05D009100 1.2e-29 133.3 121 58.7
MD01G1187500 Malus domestica HOM05D007196 ORTHO05D009100 1.2e-29 133.3 106 66.0
Glyma.16G203100 Glycine max HOM05D007196 ORTHO05D009100 1.5e-29 132.9 82 76.8
PGR142G2119 Punica granatum HOM05D007196 ORTHO05D009100 1.5e-29 132.9 78 79.5
Glyma.09G152100 Glycine max HOM05D007196 ORTHO05D009100 2.0e-29 132.5 82 76.8
Potri.015G132500 Populus trichocarpa HOM05D007196 ORTHO05D009100 2.0e-29 132.5 78 80.8
Zm00001eb320190 Zea mays HOM05D007196 ORTHO05D009100 2.6e-29 132.1 78 75.6
COL.COLO4_14199 Corchorus olitorius HOM05D007196 ORTHO05D009100 3.4e-29 131.7 113 63.7
PGSC0003DMG400031014 Solanum tuberosum HOM05D007196 ORTHO05D009100 3.4e-29 131.7 109 64.2
TWI23G0806 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 3.4e-29 131.7 110 60.0
DCAR_018131 Daucus carota HOM05D007196 ORTHO05D009100 4.4e-29 131.3 106 65.1
CAN.G1481.5 Capsicum annuum HOM05D007196 ORTHO05D009100 5.7e-29 131.0 78 78.2
Cc02_g03760 Coffea canephora HOM05D007196 ORTHO05D009100 5.7e-29 131.0 79 78.5
Gohir.D11G007600 Gossypium hirsutum HOM05D007196 ORTHO05D009100 7.5e-29 130.6 117 61.5
Gorai.007G009100 Gossypium raimondii HOM05D007196 ORTHO05D009100 7.5e-29 130.6 79 79.7
Nitab4.5_0003984g0020 Nicotiana tabacum HOM05D007196 ORTHO05D009100 7.5e-29 130.6 109 64.2
Peaxi162Scf00192g00828 Petunia axillaris HOM05D007196 ORTHO05D009100 7.5e-29 130.6 109 64.2
SalBow4G2038 Salvia bowleyana HOM05D007196 ORTHO05D009100 7.5e-29 130.6 109 59.6
Duzib205G0862 Durio zibethinus HOM05D007196 ORTHO05D009100 1.3e-28 129.8 79 79.7
Duzib205G1842 Durio zibethinus HOM05D007196 ORTHO05D009100 1.3e-28 129.8 79 79.7
Phvul.004G125800 Phaseolus vulgaris HOM05D007196 ORTHO05D009100 1.7e-28 129.4 106 62.3
Atru.chr1.612 Acer truncatum HOM05D007196 ORTHO05D009100 2.2e-28 129.0 74 81.1
Gohir.A11G008400 Gossypium hirsutum HOM05D007196 ORTHO05D009100 2.2e-28 129.0 117 61.5
Hma1.2p1_0488F.1_g163760 Hydrangea macrophylla HOM05D007196 ORTHO05D009100 2.2e-28 129.0 79 77.2
Potri.012G130600 Populus trichocarpa HOM05D007196 ORTHO05D009100 2.2e-28 129.0 78 78.2
Os07g0467200 Oryza sativa ssp. japonica HOM05D007196 ORTHO05D009100 2.8e-28 128.6 74 79.7
QL12p039322 Quercus lobata HOM05D007196 ORTHO05D009100 2.8e-28 128.6 148 54.1
Sabra12G0098300 Salix brachista HOM05D007196 ORTHO05D009100 2.8e-28 128.6 74 82.4
unitig_52.g17755 Utricularia gibba HOM05D007196 ORTHO05D009100 6.3e-28 127.5 78 76.9
CANSAT21G1841 Cannabis sativa HOM05D007196 ORTHO05D009100 8.3e-28 127.1 115 57.4
FAN06G1802 Fragaria x ananassa HOM05D007196 ORTHO05D009100 8.3e-28 127.1 106 66.0
RcHm_v2.0_Chr1g0375291 Rosa chinensis HOM05D007196 ORTHO05D009100 8.3e-28 127.1 86 73.3
FAN06G4298 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.1e-27 126.7 106 66.0
Solyc03g007030.3 Solanum lycopersicum HOM05D007196 ORTHO05D009100 1.1e-27 126.7 109 61.5
Sopen03g003020 Solanum pennellii HOM05D007196 ORTHO05D009100 1.8e-27 125.9 109 61.5
FAN03G0205 Fragaria x ananassa HOM05D007196 ORTHO05D009100 2.4e-27 125.6 106 66.0
GSVIVG01018482001 Vitis vinifera HOM05D007196 ORTHO05D009100 2.4e-27 125.6 75 80.0
Cc00_g08970 Coffea canephora HOM05D007196 ORTHO05D009100 3.1e-27 125.2 106 65.1
FAN10G3863 Fragaria x ananassa HOM05D007196 ORTHO05D009100 3.1e-27 125.2 105 64.8
FvH4_7g28320 Fragaria vesca HOM05D007196 ORTHO05D009100 4.1e-27 124.8 106 65.1
PSO478G0391 Papaver somniferum HOM05D007196 ORTHO05D009100 4.1e-27 124.8 105 61.9
HPP92_007351 Vanilla planifolia HOM05D007196 ORTHO05D009100 4.1e-27 124.8 78 73.1
Aqoxy7G00560 Aquilegia oxysepala HOM05D007196 ORTHO05D009100 1.3e-25 119.8 112 59.8
MBI12_g21133_MAGBIO Magnolia biondii HOM05D007196 ORTHO05D009100 1.3e-25 119.8 71 80.3
Mapoly0132s0038 Marchantia polymorpha HOM05D007196 ORTHO05D009100 2.3e-25 119.0 79 72.2
CDE11G1107 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 2.9e-25 118.6 107 55.1
SEGI_24908 Sequoiadendron giganteum HOM05D007196 ORTHO05D009100 4.2e-24 114.8 62 82.3
SMO367G0606 Selaginella moellendorffii HOM05D003621 ORTHO05D004259 5.5e-24 114.4 80 68.8
Pp3c23_14000 Physcomitrium patens HOM05D007196 ORTHO05D009100 9.5e-24 113.6 110 54.5
PSO782G2298 Papaver somniferum HOM05D007196 ORTHO05D009100 2.8e-23 112.1 98 60.2
AagrBONN_evm.TU.Sc2ySwM_117.3845 Anthoceros agrestis HOM05D007196 ORTHO05D009100 3.6e-23 111.7 62 77.4
Pp3c24_720 Physcomitrium patens HOM05D007196 ORTHO05D009100 3.6e-23 111.7 114 52.6
CDE02G2935 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 1.0e-22 110.2 109 51.4
AUR62023670 Chenopodium quinoa HOM05D007196 ORTHO05D001134 1.8e-22 109.4 64 79.7
CAN.G1135.2 Capsicum annuum HOM05D007196 ORTHO05D009100 2.4e-19 99.0 84 61.9
CBR_g49669 Chara braunii HOM05D007196 ORTHO05D009100 2.4e-19 99.0 68 66.2
PGSC0003DMG400019391 Solanum tuberosum HOM05D007196 ORTHO05D009100 7.0e-19 97.4 79 60.8
Cre01.g050550 Chlamydomonas reinhardtii HOM05D007196 ORTHO05D009100 5.9e-18 94.4 86 48.8
Dinv28524 Davidia involucrata HOM05D007196 ORTHO05D009100 4.0e-14 81.6 90 53.3
Haze_26518 Corylus avellana HOM05D007196 ORTHO05D009100 3.4e-13 78.6 66 53.0
Haze_13814 Corylus avellana HOM05D007196 ORTHO05D009100 9.2e-11 70.5 64 64.1
Cc05_g04470 Coffea canephora HOM05D007196 ORTHO05D009100 5.6e-08 61.2 28 92.9
Nn4g26452 Nelumbo nucifera HOM05D007196 ORTHO05D009100 4.7e-07 58.2 68 50.0
VMungo0464G1496 Vigna mungo HOM05D007196 ORTHO05D009100 8.0e-07 57.4 46 63.0
FAN03G1444 Fragaria x ananassa HOM05D000077 ORTHO05D000981 1.4e-06 56.6 97 46.4


User provided reference genes

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