Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.5e-68 261.9 125 100.0
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.2e-22 110.2 52 96.2
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.2e-22 110.2 52 96.2
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.2e-22 110.2 52 96.2
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.2e-22 110.2 52 96.2
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.2e-22 110.2 52 96.2
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 6.0e-22 107.8 52 94.2
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 6.0e-22 107.8 52 94.2
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 6.0e-22 107.8 52 94.2
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 6.0e-22 107.8 52 94.2
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.0e-21 107.1 51 96.1
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.3e-21 106.7 51 96.1
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.3e-21 106.7 51 96.1
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.7e-21 106.3 51 94.1
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-21 106.3 52 94.2
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.7e-21 106.3 52 94.2
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 2.3e-21 105.9 52 90.4
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 5.0e-21 104.8 52 90.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 5.0e-21 104.8 52 92.3
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 6.6e-21 104.4 52 90.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 8.6e-21 104.0 51 94.1
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.5e-20 102.4 52 90.4
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-19 100.1 52 84.6
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.2e-19 100.1 52 84.6
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.1e-18 95.5 51 84.3
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 4.0e-18 95.1 51 84.3
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 3.4e-17 92.0 51 80.4
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 5.8e-17 91.3 50 82.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 5.8e-17 91.3 51 78.4
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.7e-16 89.7 51 78.4
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.2e-16 89.4 51 76.5
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 3.7e-16 88.6 51 78.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 4.9e-16 88.2 51 76.5
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 4.9e-16 88.2 51 76.5
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 4.9e-16 88.2 51 82.4
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.9e-16 88.2 51 82.4
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 6.4e-16 87.8 51 74.5
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 6.4e-16 87.8 51 78.4
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.1e-15 87.0 51 76.5
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.1e-15 87.0 51 74.5
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.1e-15 87.0 50 80.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.1e-15 87.0 95 50.5
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.4e-15 86.7 51 74.5
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.4e-15 86.7 51 74.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.4e-15 86.7 51 74.5
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 1.4e-15 86.7 51 74.5
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.4e-15 86.7 51 74.5
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.9e-15 86.3 51 76.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.9e-15 86.3 51 80.4
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.4e-15 85.9 51 78.4
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.4e-15 85.9 51 78.4
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 2.4e-15 85.9 51 78.4
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 2.4e-15 85.9 51 76.5
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 3.2e-15 85.5 51 74.5
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 3.2e-15 85.5 65 60.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.2e-15 85.5 50 78.0
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 4.1e-15 85.1 51 76.5
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 4.1e-15 85.1 51 76.5
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 5.4e-15 84.7 51 76.5
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 5.4e-15 84.7 51 76.5
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 5.4e-15 84.7 50 76.0
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 5.4e-15 84.7 51 74.5
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 7.0e-15 84.3 61 67.2
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 7.0e-15 84.3 51 72.5
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 9.2e-15 84.0 50 80.0
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 9.2e-15 84.0 50 80.0
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 9.2e-15 84.0 51 76.5
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 9.2e-15 84.0 51 74.5
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 9.2e-15 84.0 51 76.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.2e-14 83.6 50 74.0
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.2e-14 83.6 51 74.5
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.2e-14 83.6 51 70.6
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-14 83.6 51 70.6
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-14 83.6 51 70.6
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.2e-14 83.6 51 74.5
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.2e-14 83.6 60 66.7
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.6e-14 83.2 50 72.0
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.6e-14 83.2 50 74.0
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.6e-14 83.2 51 74.5
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.6e-14 83.2 50 72.0
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.6e-14 83.2 51 74.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.6e-14 83.2 51 78.4
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.6e-14 83.2 51 70.6
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.6e-14 83.2 65 61.5
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.6e-14 83.2 50 74.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.1e-14 82.8 50 74.0
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 2.1e-14 82.8 51 74.5
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.1e-14 82.8 50 74.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 2.1e-14 82.8 50 74.0
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.1e-14 82.8 50 72.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.1e-14 82.8 51 74.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.1e-14 82.8 51 74.5
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.7e-14 82.4 93 45.2
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.7e-14 82.4 51 68.6
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 2.7e-14 82.4 51 74.5
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.7e-14 82.4 51 72.5
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.7e-14 82.4 51 74.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.5e-14 82.0 50 72.0
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.5e-14 82.0 51 72.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.5e-14 82.0 51 72.5
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 4.6e-14 81.6 51 74.5
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 4.6e-14 81.6 51 68.6
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 4.6e-14 81.6 51 72.5
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 4.6e-14 81.6 51 72.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 4.6e-14 81.6 51 72.5
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 6.0e-14 81.3 51 72.5
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 6.0e-14 81.3 51 72.5
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 6.0e-14 81.3 49 69.4
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 6.0e-14 81.3 50 68.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 7.8e-14 80.9 98 43.9
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 7.8e-14 80.9 51 72.5
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 7.8e-14 80.9 51 70.6
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 7.8e-14 80.9 51 72.5
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 7.8e-14 80.9 50 68.0
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.0e-13 80.5 51 70.6
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.0e-13 80.5 51 68.6
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.0e-13 80.5 51 70.6
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.0e-13 79.0 51 64.7
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.0e-13 79.0 51 64.7
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 3.0e-13 79.0 51 72.5
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.9e-13 78.6 50 66.0
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.9e-13 78.6 50 66.0
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 3.9e-13 78.6 51 70.6
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.6e-13 77.8 82 48.8
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 8.6e-13 77.4 50 68.0
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.1e-12 77.0 51 58.8
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.9e-12 76.3 47 70.2
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.3e-12 75.5 50 70.0
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 3.3e-12 75.5 57 59.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.7e-11 71.6 50 66.0
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 8.1e-11 70.9 51 54.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.8e-10 69.7 60 55.0
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.8e-10 69.7 53 56.6
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 8.9e-10 67.4 63 52.4
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.1e-07 60.5 54 51.9


User provided reference genes

Program Settings