Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 4.7e-86 321.2 171 100.0
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 2.4e-82 308.9 171 95.3
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 7.0e-82 307.4 171 94.7
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 7.2e-79 297.4 169 93.5
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 1.0e-77 293.5 171 90.6
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 3.0e-77 292.0 171 88.9
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 7.5e-76 287.3 168 89.9
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 1.6e-70 269.6 169 86.4
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 5.8e-68 261.2 201 73.6
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 4.9e-67 258.1 169 81.7
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 4.9e-67 258.1 169 81.7
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 4.9e-67 258.1 169 81.7
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 1.1e-66 256.9 171 81.3
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 1.1e-66 256.9 171 81.3
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 1.2e-54 216.9 168 70.2
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 3.4e-36 155.6 174 54.6
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 5.8e-36 154.8 173 53.8
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 3.8e-35 152.1 176 52.3
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 1.1e-34 150.6 173 49.1
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 1.4e-34 150.2 173 52.0
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 4.2e-34 148.7 173 52.0
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 9.3e-34 147.5 173 49.7
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 2.7e-33 146.0 174 51.7
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 2.7e-33 146.0 176 50.6
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 3.5e-33 145.6 173 48.0
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 4.6e-33 145.2 173 48.6
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 1.3e-32 143.7 175 49.7
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 5.1e-32 141.7 173 50.9
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 1.5e-31 140.2 175 47.4
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 1.5e-31 140.2 173 48.0
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 1.9e-31 139.8 173 48.0
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 3.3e-31 139.0 164 51.2
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 4.3e-31 138.7 173 46.8
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 4.3e-31 138.7 183 47.0
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 5.6e-31 138.3 171 46.8
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 5.6e-31 138.3 172 49.4
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 9.6e-31 137.5 173 46.2
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 1.3e-30 137.1 124 62.9
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 1.3e-30 137.1 171 46.2
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 1.6e-30 136.7 173 45.7
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 2.1e-30 136.3 173 48.0
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 4.8e-30 135.2 173 46.8
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 6.2e-30 134.8 173 45.7
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 1.1e-29 134.0 175 49.7
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 9.0e-29 131.0 175 45.1
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 1.2e-28 130.6 172 44.8
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.5e-28 130.2 173 43.4
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 1.5e-28 130.2 178 47.2
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 2.6e-28 129.4 174 43.1
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 7.6e-28 127.9 171 43.3
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 7.6e-28 127.9 173 43.9
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.2e-27 126.3 173 42.2
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 2.2e-27 126.3 173 44.5
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 2.2e-27 126.3 173 43.4
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 2.9e-27 125.9 175 44.0
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 2.9e-27 125.9 173 42.2
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 2.9e-27 125.9 173 41.0
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 3.8e-27 125.6 175 45.1
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 4.9e-27 125.2 175 41.7
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 8.4e-27 124.4 173 46.8
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 1.1e-26 124.0 173 43.4
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 1.4e-26 123.6 175 41.7
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 1.4e-26 123.6 173 44.5
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 1.9e-26 123.2 175 41.1
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 1.9e-26 123.2 164 43.3
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 2.4e-26 122.9 173 41.0
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 4.2e-26 122.1 164 42.7
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 9.3e-26 120.9 171 41.5
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 1.2e-25 120.6 171 41.5
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 1.6e-25 120.2 171 42.7
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 1.3e-24 117.1 175 40.6
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 1.3e-24 117.1 178 42.7
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 6.7e-24 114.8 173 43.4
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 6.7e-24 114.8 173 43.4
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 6.7e-24 114.8 181 42.5
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 6.7e-24 114.8 114 55.3
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.1e-23 114.0 173 42.8
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 5.6e-23 111.7 181 39.8
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 7.4e-23 111.3 181 42.0
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 9.6e-23 110.9 173 41.6
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.6e-22 110.2 123 46.3
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 3.7e-22 109.0 185 40.0
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 1.1e-21 107.5 181 38.1
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 1.8e-21 106.7 112 50.0
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 1.8e-21 106.7 182 40.1
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 1.8e-21 106.7 180 40.0
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 2.4e-21 106.3 180 40.0
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 9.0e-21 104.4 183 39.3
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 1.2e-20 104.0 123 44.7
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 3.4e-20 102.4 181 39.2
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 3.4e-20 102.4 169 42.6
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 1.0e-19 100.9 109 49.5
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 1.7e-19 100.1 147 41.5
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 6.5e-19 98.2 172 40.1
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 1.1e-18 97.4 173 37.0
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 4.2e-18 95.5 121 43.8
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 5.5e-18 95.1 110 48.2
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 9.3e-18 94.4 140 46.4
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 1.0e-16 90.9 173 40.5
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 4.5e-12 75.5 145 33.8
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 7.6e-12 74.7 171 32.2
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 6.5e-11 71.6 86 46.5
Aqoxy3G03161 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 5.5e-10 68.6 147 32.0
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 7.1e-10 68.2 47 74.5
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 7.1e-10 68.2 137 35.0
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 3.5e-09 65.9 190 31.6
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 1.8e-08 63.5 104 35.6
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 3.0e-08 62.8 114 33.3
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 3.0e-08 62.8 173 31.8
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 3.9e-08 62.4 108 34.3
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 6.7e-08 61.6 77 42.9
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 8.7e-08 61.2 173 31.2
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 4.3e-07 58.9 165 30.3
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 7.4e-07 58.2 144 33.3
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 1.3e-06 57.4 114 30.7


User provided reference genes

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